G71118


Basic Information

Item Value
gene id G71118
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4339465 ~ 4340328 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95934
atctcaatattttgagatactaagtgtgtttgcttttgggagaaaagtttattttatttattattattaagttaactgctatatcaatattttgacatactaagtcattattttaagattcgatttcattatttgagatactatctaaatattttaagatagtcattataaataaataaatagggcgccgagtggtccaacagtctaaagcgctgccactatgagcagggggtcgcaggttcgaaccccagctcatgcagctttgccaccaagctgccagcgctcagagggagcaaaaattggccctgctgggtagatggtgctctctccccacatcactcctatggtgatatctgcagcacagggcgtctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccgagcgtgctgtgatgctgctcggcaatgctgcatcagcagcagcacaaaaagaagcggtggctgacttcacatgtatcagaggaagcatgtgttagtcttcactctcctggtgtgttggggctttactagtgatagggggagtcctaatgggtgggttgggtaattggccgtgtaaattggggagaaaatgggaaaaatttgaaataaaattgttattataaataaagaaataaataaatagtcatTATAAATAGAAGCGTGTTATTAAATCAATCCCTGCTCTGCAAGATCCGGAggcttattttgatattgtgtgattcctctaaaagcaccaatattttatgatttgtgAATCCACATCTGAAGTAGTCCTCAATAATAGTATCCATTTTGCATCTTTGTCCtacctgcttctgtctctgtacagtctactagtatctcaaaataatga
>TU95935
atctcaatattttgagatactaagtgtgtttgcttttgggagaaaagtttattttatttattattattaagttaactgctatatcaatattttgacatactaagtcattattttaagattcgatttcattatttgagatactatctaaatattttaagatagtcattataaataaataaatagggcgccgagtggtccaacagtctaaagcgctgccactatgagcagggggtcgcaggttcgaaccccagctcatgcagctttgccaccaagctgccagcgctcagagggagcaaaaattggccctgctgggtagatggtgctctctccccacatcactcctatggtgatatctgcagcacagggcgtctgtgagctgatgtatcagaaccgagtcgctgcgctttcctccgagcgtgctgtgatgctgctcggcaatgctg

Function

NR:

description
PREDICTED: receptor tyrosine-protein kinase erbB-4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95934 True 864 lncRNA 0.40 1 4339465 4340328
TU95935 False 443 lncRNA 0.43 1 4339465 4339907

Neighbor

gene id symbol gene type direction distance location
dpy19l4 dpy19l4 coding upstream 383 4306665 ~ 4339082 (+)
LOC103045063 LOC108435620 coding upstream 123749 4132022 ~ 4215716 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 233502 3955008 ~ 4105963 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 404361 3923972 ~ 3935104 (+)
LOC103043978 NA coding upstream 900310 3420240 ~ 3439155 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 517520 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 588849 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 602878 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 615951 4956279 ~ 4957026 (+)
LOC111193046 NA coding downstream 639139 4979467 ~ 4980022 (+)
G71112 NA non-coding upstream 36655 4302551 ~ 4302810 (+)
G71109 NA non-coding upstream 46009 4293237 ~ 4293456 (+)
G71103 NA non-coding upstream 48630 4290459 ~ 4290835 (+)
G71075 NA non-coding upstream 146809 4189625 ~ 4192656 (+)
G71073 NA non-coding upstream 185236 4151858 ~ 4154229 (+)
G71117 NA non-coding downstream 359 4340687 ~ 4343650 (+)
G71123 NA non-coding downstream 5006 4345334 ~ 4345551 (+)
G71129 NA non-coding downstream 30816 4371144 ~ 4382681 (+)
G71132 NA non-coding downstream 105438 4445766 ~ 4461142 (+)
G71147 herpud2,LOC108435611,LOC108275212,LOC107686057,LOC107737813,LOC107592253,LOC105897640 non-coding downstream 115602 4455930 ~ 4460401 (+)
LOC111193071 NA other upstream 764707 3409670 ~ 3574758 (+)
G70846 NA other upstream 960855 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1046990 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 1980236 2358883 ~ 2359229 (+)
lrrtm2 lrrtm2,LOC107680618,LOC107750357,LOC103471148 other upstream 2145906 2088920 ~ 2193559 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other downstream 16737 4357065 ~ 4441931 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 575485 4915813 ~ 4921820 (+)
G71247 NA other downstream 615970 4956298 ~ 4980011 (+)
G71249 NA other downstream 623374 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1159580 5499908 ~ 5505638 (+)

Expression


Co-expression Network