G71147 (herpud2,LOC108435611,LOC108275212,LOC107686057,LOC107737813,LOC107592253,LOC105897640)


Basic Information

Item Value
gene id G71147
gene name herpud2,LOC108435611,LOC108275212,LOC107686057,LOC107737813,LOC107592253,LOC105897640
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4455930 ~ 4460401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU95985
ACGTCTCTGAGTTTACAGTGATCCTGGAGGAGCTTTCCAGAATACACCAGCCTCTGATCCTTCGAGCGAGGTTTGCTCGGATAAACCTTGGAAAGGTGCCTCTTCAGTTTCTCCACCGTCCAGTTCAGAAAACAGTTGATGGTCTGGTCATCATACTTCTGATCCGGTGCTTTAATGACCAGGATGACAGGACTGTCCACCACGCCTTGCTCCATCTCGTCACACACACTCTGCGAGACagaagtgtgtgtttctgtcttcTAGGCTGCTGGGACGACAatctg

Function

symbol description
herpud2 Predicted to be involved in endoplasmic reticulum unfolded protein response. Predicted to act upstream of or within response to unfolded protein. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human HERPUD2 (HERPUD family member 2).

NR:

description
PREDICTED: dual specificity tyrosine-phosphorylation-regulated kinase 1B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU95985 True 284 lncRNA 0.50 2 4455930 4460401

Neighbor

gene id symbol gene type direction distance location
dpy19l4 dpy19l4 coding upstream 116848 4306665 ~ 4339082 (+)
LOC103045063 LOC108435620 coding upstream 240214 4132022 ~ 4215716 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 349967 3955008 ~ 4105963 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 520826 3923972 ~ 3935104 (+)
LOC103043978 NA coding upstream 1016775 3420240 ~ 3439155 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding downstream 397447 4857848 ~ 4884488 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 468776 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 482805 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 495878 4956279 ~ 4957026 (+)
LOC111193046 NA coding downstream 519066 4979467 ~ 4980022 (+)
G71129 NA non-coding upstream 73249 4371144 ~ 4382681 (+)
G71123 NA non-coding upstream 110379 4345334 ~ 4345551 (+)
G71117 NA non-coding upstream 112280 4340687 ~ 4343650 (+)
G71118 NA non-coding upstream 115602 4339465 ~ 4340328 (+)
G71112 NA non-coding upstream 153120 4302551 ~ 4302810 (+)
G71194 NA non-coding downstream 50400 4510801 ~ 4511397 (+)
G71201 NA non-coding downstream 161417 4621818 ~ 4622240 (+)
G71209 NA non-coding downstream 217930 4678331 ~ 4678722 (+)
G71215 NA non-coding downstream 283752 4744153 ~ 4844213 (+)
G71244 NA non-coding downstream 481008 4941409 ~ 4942117 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 13999 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 881172 3409670 ~ 3574758 (+)
G70846 NA other upstream 1077320 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1163455 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 2096701 2358883 ~ 2359229 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other downstream 455412 4915813 ~ 4921820 (+)
G71247 NA other downstream 495897 4956298 ~ 4980011 (+)
G71249 NA other downstream 503301 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 1039507 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 1212317 5672718 ~ 5678874 (+)

Expression


Co-expression Network