atpif1 (atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180)


Basic Information

Item Value
gene id atpif1
gene name atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4915813 ~ 4921820 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96100
TGGAGTTTCTCCACTGTTTCCGGGAGCAGATCATACACAAGGACACACAGCACAGATCACACAGAGCTGTGGAGCTGAGGAGCAGCCATGGCGCGGTTTCTGAGGACTAGTATACGGGGCTATTATATGAGCCAGGTCCGGCTGAACTCTGATCAGcTTGGAGAGTTGGGGAAAGGAGCTGGTAAAGGTGGAGGAGCCGGAGGGTCTATAAGGGAAGCTGGTGGAGCTTTTGGAAAGAAGCAGGGCAGCTGAAGAAGAGCGGTACTTCAAGCAGAAGGAGAAGGAGCAGATGGCCGCTCTAAAGAATCACCACAAGGAGGAGATCGAGCACCATAAAAAAGAGATTGAGCGTCTTCAGCGTGAGATCGACCGCCACAAGGGCAAGATCAGAAAACTCAACCATGACGACTGAGCTGTGCCACCACAGCACTCCTGCGTATCACTCGGTTTCTGCCAAAATTCACTCAATGCCTGTTCCCACGAGCAGCTCCCTCTTACTAATTTCTTGTGGTAAATGGAGTTTATGGAATcattaataaagaatataaagagTTTTCGAAAAGGTGT
>XM_007239844.3
CTCCACTGTTTCCGGGAGCAGATCATACACAAGGACACACAGCACAGATCACACAGAGCTGTGGAGCTGAGGAGCAGCCATGGCGCGGTTTCTGAGGACTAGTATACGGGGCTATTATATGAGCCAGGTCCGGCTGAACTCTGATCAGcTTGGAGAGTTGGGGAAAGGAGCTGGTAAAGGTGGAGGAGCCGGAGGGTCTATAAGGGAAGCTGGTGGAGCTTTTGGAAAGAAGCAGGCAGCTGAAGAAGAGCGGTACTTCAAGCAGAAGGAGAAGGAGCAGATGGCCGCTCTAAAGAATCACCACAAGGAGGAGATCGAGCACCATAAAAAAGAGATTGAGCGTCTTCAGCGTGAGATCGACCGCCACAAGGGCAAGATCAGAAAACTCAACCATGACGACTGAGCTGTGCCACCACAGCACTCCTGCGTATCACTCGGTTTCTGCCAAAATTCACTCAATGCCTGTTCCCACGAGCAGCTCCCTCTTACTAATTTCTTGTGGTAAATGGAGTTTATGGAATcattaataaagaatataaagagTTTTCGAAAAGGTG

Function

symbol description
atpif1 Predicted to enable several functions, including ATPase binding activity; angiostatin binding activity; and mitochondrial proton-transporting ATP synthase complex binding activity. Involved in erythrocyte differentiation and heme biosynthetic process. Acts upstream of or within positive regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway and reactive oxygen species metabolic process. Located in mitochondrion. Is expressed in several structures, including alimentary system; central nervous system; orbito-sphenoid; retina; and trigeminal nerve. Orthologous to human ATP5IF1 (ATP synthase inhibitory factor subunit 1).

GO:

id name namespace
GO:0043086 negative regulation of catalytic activity biological_process
GO:0045980 negative regulation of nucleotide metabolic process biological_process
GO:0009790 embryo development biological_process
GO:0005739 mitochondrion cellular_component
GO:0004857 enzyme inhibitor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96100 True 567 lncRNA 0.49 3 4915813 4921820
XM_007239844.3 False 557 mRNA 0.50 4 4915821 4921819

Neighbor

gene id symbol gene type direction distance location
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 31325 4857848 ~ 4884488 (+)
dpy19l4 dpy19l4 coding upstream 576731 4306665 ~ 4339082 (+)
LOC103045063 LOC108435620 coding upstream 700097 4132022 ~ 4215716 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 809850 3955008 ~ 4105963 (+)
LOC103032643 deptor,LOC108442483,LOC108274614,LOC107685573 coding upstream 980709 3923972 ~ 3935104 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding downstream 7357 4929177 ~ 4935065 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 21386 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 34459 4956279 ~ 4957026 (+)
LOC111193046 NA coding downstream 57647 4979467 ~ 4980022 (+)
cfap69 cfap69 coding downstream 126686 5048506 ~ 5067507 (+)
G71215 NA non-coding upstream 71600 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 237091 4678331 ~ 4678722 (+)
G71201 NA non-coding upstream 293573 4621818 ~ 4622240 (+)
G71194 NA non-coding upstream 404416 4510801 ~ 4511397 (+)
G71132 NA non-coding upstream 454671 4445766 ~ 4461142 (+)
G71244 NA non-coding downstream 19589 4941409 ~ 4942117 (+)
G71248 NA non-coding downstream 36336 4958156 ~ 5006225 (+)
G71246 NA non-coding downstream 42151 4963971 ~ 4968919 (+)
G71256 NA non-coding downstream 69032 4990852 ~ 4993179 (+)
G71260 NA non-coding downstream 79271 5001091 ~ 5043758 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 473882 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1341055 3409670 ~ 3574758 (+)
G70846 NA other upstream 1537203 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1623338 3121918 ~ 3292475 (+)
G70604 LOC108436838 other upstream 2556584 2358883 ~ 2359229 (+)
G71247 NA other downstream 34478 4956298 ~ 4980011 (+)
G71249 NA other downstream 41882 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 578088 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 750898 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 949270 5871090 ~ 5957019 (+)

Expression


Co-expression Network