G71244


Basic Information

Item Value
gene id G71244
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4941409 ~ 4942117 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96107
TCAGGCATGtaactaacacagactctattatatgacaaactaacccacatgatacataaggcatttaactaacacataggatctaTTGTATGGCGTATTAACCACGTGTTACTGACATATTagcatataacatatgaaatctattgtgtgaCTTGTTTAGCTCACGCTTAAGGCATTTTGGTCACTGCATGATCCtaactaacggccatcaatcatcgaCTGGTGCACTCTGTACGAActaaattgatacaaaggagacTTCGGGATGAACAGGGCGGCCTTTCTCTCTGCGTGTAAAGTCCTTCACCTATCAAAGCGGGAGGAGGACATGCGCACATAGGGAGGGCGGCACTGTCTAATtcctgaaacaatgccacactgtctgactggacccagtcaattcctgaaacaatgccacactgTCTGGCTGgacacagtcaaggccaaacactagtggtccggccagacctgtgaaacttgagtactaacacgtgaaattatgcatattaacatgagctaatcattagcaacgcctcatcagcaggtttcacgtcatttggggtataaacatggagtcagatcagagggggttCAGAACTTttactgggacggctgttaactgtcttgtatgtattggttctgctgaattcagtattttgtaataaatacttgatttgctttcaacttcactccacctgtctgcgaATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96107 True 709 lncRNA 0.43 1 4941409 4942117

Neighbor

gene id symbol gene type direction distance location
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 6344 4929177 ~ 4935065 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 56921 4857848 ~ 4884488 (+)
dpy19l4 dpy19l4 coding upstream 602327 4306665 ~ 4339082 (+)
LOC103045063 LOC108435620 coding upstream 725693 4132022 ~ 4215716 (+)
LOC103042852 LOC108274605,LOC108435589,LOC105028044 coding upstream 835446 3955008 ~ 4105963 (+)
dnajc8 dnajc8,LOC102775708 coding downstream 1089 4943206 ~ 4954889 (+)
LOC111193076 NA coding downstream 14162 4956279 ~ 4957026 (+)
LOC111193046 NA coding downstream 37350 4979467 ~ 4980022 (+)
cfap69 cfap69 coding downstream 106389 5048506 ~ 5067507 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding downstream 126784 5068901 ~ 5082606 (+)
G71215 NA non-coding upstream 97196 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 262687 4678331 ~ 4678722 (+)
G71201 NA non-coding upstream 319169 4621818 ~ 4622240 (+)
G71194 NA non-coding upstream 430012 4510801 ~ 4511397 (+)
G71132 NA non-coding upstream 480267 4445766 ~ 4461142 (+)
G71248 NA non-coding downstream 16039 4958156 ~ 5006225 (+)
G71246 NA non-coding downstream 21854 4963971 ~ 4968919 (+)
G71256 NA non-coding downstream 48735 4990852 ~ 4993179 (+)
G71260 NA non-coding downstream 58974 5001091 ~ 5043758 (+)
G71287 nudcd2 non-coding downstream 191618 5133735 ~ 5137567 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 19589 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 499478 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1366651 3409670 ~ 3574758 (+)
G70846 NA other upstream 1562799 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1648934 3121918 ~ 3292475 (+)
G71247 NA other downstream 14181 4956298 ~ 4980011 (+)
G71249 NA other downstream 21585 4963702 ~ 4967907 (+)
G71414 gstp1 other downstream 557791 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 730601 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 928973 5871090 ~ 5957019 (+)

Expression


Co-expression Network