G71248


Basic Information

Item Value
gene id G71248
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4958156 ~ 5006225 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96119
aggaaaacacattaaagAAGCAGGAAGCATATATccatcaaaaatacaaaacactgattactttaaacatgtttaaactaCAATTTTCCTCAGTTTTACACTCATCTCATCATTTTCtagactttttttaaatcatatgttACTCATGTCTTTCCTCGTTAGAAACCCTGAGTAAGGCTCAGTCTCTGCATTTCATTTAGTGCAGTGTTTTActacaaacacattaaaatcaaAACATCAGcatgtgcaacataaaaaaaacacaaaaaaaatcagctgatataaatgtttaaacaatataaaatgatGAACAATGATCTACGTCAGtacataatacattaataaaaatctatttcttttttctaaCAGGCTTCATGATTGCagtaaaatgcaaatattaacaAATCCACTTCTCAGTTATGCTCTCACACTCAGACCTGCTGCCACTCTGCCTCTCACAGGCTTACTGTGCTGTTTCACTCTGTGAGTCAGTGGCTCTTCGTCCGAGCTGTCTGCCTCACTTTTCACATCTGTGGTTGCTCTGCCTCTCACAGGTTTACTGTGCTGTTTCAGTCTCTTCACTTTGTGACTCAGCGGCTCCTCATCTGAACTTTCTGCTTTACTCTTCTCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96119 True 633 lncRNA 0.36 3 4958156 5006225

Neighbor

gene id symbol gene type direction distance location
LOC111193076 NA coding upstream 1130 4956279 ~ 4957026 (+)
dnajc8 dnajc8,LOC102775708 coding upstream 3267 4943206 ~ 4954889 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 23091 4929177 ~ 4935065 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 73668 4857848 ~ 4884488 (+)
dpy19l4 dpy19l4 coding upstream 619074 4306665 ~ 4339082 (+)
cfap69 cfap69 coding downstream 42281 5048506 ~ 5067507 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding downstream 62676 5068901 ~ 5082606 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding downstream 85653 5091878 ~ 5117839 (+)
ccng1 ccng1,LOC107745080 coding downstream 117729 5123954 ~ 5130557 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 137540 5143765 ~ 5173256 (+)
G71244 NA non-coding upstream 16039 4941409 ~ 4942117 (+)
G71215 NA non-coding upstream 113943 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 279434 4678331 ~ 4678722 (+)
G71201 NA non-coding upstream 335916 4621818 ~ 4622240 (+)
G71194 NA non-coding upstream 446759 4510801 ~ 4511397 (+)
G71287 nudcd2 non-coding downstream 127510 5133735 ~ 5137567 (+)
G71294 NA non-coding downstream 198991 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 289453 5295678 ~ 5298321 (+)
G71397 NA non-coding downstream 317444 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 402806 5409031 ~ 5410313 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 36336 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 516225 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1383398 3409670 ~ 3574758 (+)
G70846 NA other upstream 1579546 3377684 ~ 3378610 (+)
LOC103024487 syngap1a,LOC108275193,LOC108439800 other upstream 1665681 3121918 ~ 3292475 (+)
G71414 gstp1 other downstream 493683 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 666493 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 864865 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1519416 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1875362 6881587 ~ 6885541 (+)

Expression


Co-expression Network