G71260


Basic Information

Item Value
gene id G71260
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5001091 ~ 5043758 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96138
gTAAAGTTTAAAGTATACAATGCATGTAAAACCACAGGATAAACAAGGTAAATATAACATTGAATCAATAATgaaatcaacctaaaatcaatGTTCAATAATAAATCAATTCTGACAATGGGGATTAACATGTTTCTATGTATTAGAATCTGATAAAATGGGCGTTGATTCAAGGTACTTGTGTTTCTTAAACCTGATCCTGGGGCAatctgccctgcacattttagcactttttctgttttttatacaCCCACTTCAGCTCAAGAAATTGTCTCTTAATGGgctgataaaataaaattaaattaaagcatgCAGGTCAGTGTGCCTCCATTATTAGAGTTGAGAAATACTGCTCTAAACTATCTGTTCATCTGTTAAAGCTGAGAGACAAAGAACCATCACTGAGAGTGAAAGAAGCACGTGGACTGAGGTGGTAAAGTTATATCACTTATAAGACTCAGACTAATACGGTTCTCATGAGCGTTGTGGCGCCCACTTCACCAAAGTTTCATAGTAGTTGGAGCCGTGCTGATCCTGCAGTAGAAACTCTCCCTATTACAGTCAGTGAAGCATCTATATGATTTTGAAACTTtaattttaaggtaaaaatacTAACTACACAGTGCTGCCCTAATTAAAcacaaacttggaaaaaatactgaacaatCTGTTCAGTATTCCCATTTTAATCCATATACAGGAAAGGGGCTCTaaagaaaatacagtacaggccaatagtttggacacacctcattcaatgtgttttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96138 True 767 lncRNA 0.36 2 5001091 5043758

Neighbor

gene id symbol gene type direction distance location
LOC111193046 NA coding upstream 21069 4979467 ~ 4980022 (+)
LOC111193076 NA coding upstream 44065 4956279 ~ 4957026 (+)
dnajc8 dnajc8,LOC102775708 coding upstream 46202 4943206 ~ 4954889 (+)
hnrnpr hnrnpr,LOC103029778,LOC105909056 coding upstream 66026 4929177 ~ 4935065 (+)
LOC103029142 LOC108435612,LOC108274509,LOC107571533,LOC107571277,LOC107730909 coding upstream 116603 4857848 ~ 4884488 (+)
cfap69 cfap69 coding downstream 4748 5048506 ~ 5067507 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding downstream 25143 5068901 ~ 5082606 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding downstream 48120 5091878 ~ 5117839 (+)
ccng1 ccng1,LOC107745080 coding downstream 80196 5123954 ~ 5130557 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 100007 5143765 ~ 5173256 (+)
G71256 NA non-coding upstream 7912 4990852 ~ 4993179 (+)
G71246 NA non-coding upstream 32172 4963971 ~ 4968919 (+)
G71244 NA non-coding upstream 58974 4941409 ~ 4942117 (+)
G71215 NA non-coding upstream 156878 4744153 ~ 4844213 (+)
G71209 NA non-coding upstream 322369 4678331 ~ 4678722 (+)
G71287 nudcd2 non-coding downstream 89977 5133735 ~ 5137567 (+)
G71294 NA non-coding downstream 161458 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 251920 5295678 ~ 5298321 (+)
G71397 NA non-coding downstream 279911 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 365273 5409031 ~ 5410313 (+)
G71247 NA other upstream 21080 4956298 ~ 4980011 (+)
G71249 NA other upstream 33184 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 79271 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 559160 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1426333 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 456150 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 628960 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 827332 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1481883 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1837829 6881587 ~ 6885541 (+)

Expression


Co-expression Network