G71287 (nudcd2)


Basic Information

Item Value
gene id G71287
gene name nudcd2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5133735 ~ 5137567 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96175
GTGAGTTTTCTCTGCATCTGGTCCTGCACCCATGGATCTGCAGCGTACTGGCCCTCTAGCAGCGAAGCCCAGCAGTTTCCAGCCTCCCGGTTCGTCTTCATCAGAACTATCCTGATCAGCTTTTTGTCTTCTAATGTCCACGTCGCCTCGTCTCCCACTGTTGTTCCAAACAGCTTTCCCTTAAATATCTCCTGTCCTCTCACACTCAGCTCCACCTCTCTGCTCCCCAGTTTACACCTGATTTCTTTACTGGATGTTCCAGGAGGGACATTTATCTCGATGAAGATCTCCTCCATGGTCTGATACCAGGAGCCCCAGGGGGTTTTACAGGGGATGACCCCGCTCCTCTCCTCGAAATGCACCGACATGCTGTGTTATTACTGTAGTTAGCTGGGCTAGTGTTATAGTTACTGCAGCCTGGCCGGGCTAACAGACTGAACCCTGTGCTGTAGTGTAACCAGCTCTGATCTGATCTAATAAAAAAGCAGAGGAGACCTACAGCTGAAGAATAACAGCAGAGGAACGCTgatactgaactgaactgatctcTCAATCTTCTCCTACATTCCTGCAGTTTCTA

Function

symbol description
nudcd2 Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be active in cytoplasm. Orthologous to human NUDCD2 (NudC domain containing 2).

NR:

description
nudC domain-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96175 True 580 lncRNA 0.49 3 5133735 5137567

Neighbor

gene id symbol gene type direction distance location
ccng1 ccng1,LOC107745080 coding upstream 3178 5123954 ~ 5130557 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 15896 5091878 ~ 5117839 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding upstream 51129 5068901 ~ 5082606 (+)
cfap69 cfap69 coding upstream 66228 5048506 ~ 5067507 (+)
LOC111193046 NA coding upstream 153713 4979467 ~ 4980022 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding downstream 6198 5143765 ~ 5173256 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding downstream 44936 5182503 ~ 5313658 (+)
atp10b NA coding downstream 202083 5339650 ~ 5408015 (+)
atp7a atp7a,LOC101485317 coding downstream 293122 5430689 ~ 5476431 (+)
LOC103038898 NA coding downstream 342821 5480388 ~ 5485164 (+)
G71260 NA non-coding upstream 89977 5001091 ~ 5043758 (+)
G71248 NA non-coding upstream 127510 4958156 ~ 5006225 (+)
G71256 NA non-coding upstream 140556 4990852 ~ 4993179 (+)
G71246 NA non-coding upstream 164816 4963971 ~ 4968919 (+)
G71244 NA non-coding upstream 191618 4941409 ~ 4942117 (+)
G71294 NA non-coding downstream 67649 5205216 ~ 5207077 (+)
G71304 NA non-coding downstream 158111 5295678 ~ 5298321 (+)
G71397 NA non-coding downstream 186102 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 271464 5409031 ~ 5410313 (+)
G71473 NA non-coding downstream 390429 5527996 ~ 5532969 (+)
G71247 NA other upstream 153724 4956298 ~ 4980011 (+)
G71249 NA other upstream 165828 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 211915 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 691804 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1558977 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 362341 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 535151 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 733523 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1388074 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1744020 6881587 ~ 6885541 (+)

Expression


Co-expression Network