G71304


Basic Information

Item Value
gene id G71304
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5295678 ~ 5298321 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96198
GGTATGTGAAACAGATACAGGTATGTGAGAGAGACGCAGAAGAGGAGGGAATGGCTAGAGAGTTATTTATgagatttaattcatatttcaacataccatatttttcagattataaagcacaccgtttcaatgaacgtctattttctggtctattctcatacataaggcacactggattataaggcgcattttaagagacactataaggaacttctgaTTTAGCAGGTCTCTCCgatgggtggtggtggggggtagctaactaatttaagtaaagctaagctaagtaagtcttttaaagtcaaataaatgctggatgttaatctacacagatttctctcctgaaaactcctgtttatttgggtgagtaaagcacttccatttatgtACAGTTAGCCTAGACTcctgaattagcattagcattagcattagcggctaatgccacccgagaaaccctgagtgttcttaGCCTGTTTTAACATGGTGAACACGCGGACTACAgcccgatatactcacctctgaacgacaaaggagctagcatggttagcggctaatgctaatgcaaccccagtactggagaactaaactgaaactcctgaataacactgtatttcagcagagtggctttactgcttcttacaacctgactggtaaaatttatacataaggtgcacgggattaaaaggtgcactgacgattttgggggaaattaaaggattttaagtgcgttttatagtgcaaaaaatatggtaatttaaGTGTAATCTAACTCCTGAACTCAACAGTAGTGTCAGTCTGTTAATATTGCTAAATAAAACCAAAGAGGGAATTACAGGAGGAAGCCAAAACCaaactttattaatttttattcaattattaattaaatatccaagtgtttttttgttttagctaCAACATTTTTACTGATGTCtacatgtttgtggacacccaaACTGATCAATACATTTAGCTCCattaagctaagttaagttgCAGCCATTGCAGTCCTCCAGTAGAAAATGAGGATGTCCTGTGATCAGGGCTTTGTGGCCAGTTTATCCcagtttattattttaggtcGGGTTCTGTAGACCTTCAGTAGATGTCATGGCTGTGTAGCAAAAATGGTCCTGCAGACCATTGGCTAAATATTAGGGGTTTGGGCTCTTATTGATCACAAAAGCTTGAAATTAGAACTGATTCAAAGAACAGTAGCACAATAATGTGACTGTTTTTTAGGGATTAATATTTTAGACTATAGTGTTGATGTCAGAATTAGTTAGCCatgtaattagttactgtaTTTTGGGCTGGTCCTGTAAACCATGGACTTTACATTGGGCTGGTTCTGTTGGGACTTTCTCTGGCAAAGCAGGgtcatactatatatatatatatatatatatatatatataatatatatatataatatatatatatatatatatatagggtatATCCAGCAAAACAAAGGAGAAGGTAAAAGAGGaggcaaaaatacaaaagcCAAAAGATAATAAACAGAGATACAAAAAAGGGTCTGTAACAAAAAGGCAAAATCAGAGTTAGGAAagctagattcaatactcagcaatgaACTGAGcaaaaagtactgaaaactCTTTTTATATACTAGTGAGGACAGGTGGAGCTAATTAGTAACTCGGAGAGTGGGAACGCAGTAGTGTCATGTGTCATGAGTGGAATCAGTGGAGTCAGTGAAGTCTGGTgttggtgcatgctgggaagtggagtctttAGAGAACAGTTCGAGTTTAGAGTTAGACCATAAGCTTGATATGAGGACGGTTTCTGTAGGGCATGATGATTCATTAGAATGGGTGTCCAAAAGCAGTAGTGCACATTTTGTACAGTATATCGGGAGCATATAGGGACTTTTGGGATTTTGGGTTTGGGATTTTGCCATCTTGACTTTAAGTAGGAAGCATTTGATCACAAGTCCTTTGGGAACCAAATGGGGCTGCTGCAAACGTCCAGTCCAGGACGCGAGGGTGATATTTGTGCAGCGTTCCTCCTCGGTTCCTCTGCAGGCAGGTGATCAGAATGCTGGAACAGTCCTCCAGAAGAAAATGAGGACGTCCTGTGATCAGGGCTTTGTGGCAGCCAGTTTATCCCCAAACTAGATTAGATGGAGGCTGGGCTGGCGTGGGTGTGGAAATTGCCTGGCTCCAATAAAGCAGGAGAACAGTCAGGGTGTCCTGTGAAGGCGGCGGGACGTCGCTGGGAGAGAAGCCGTCCTGCTCTGAGCGCCATTAAAGAGTGCACGGGCGGATCCCCTCTGATCTGCTGCCTCTGATTGCGCCGACAAACTCTCGGCCGGATGGTCGTTACCGGTGTGTTTTCTGGCTAATAGGGCCGTGTTCTGGCGTGATGAAAAAGTGCCCGTCTCCTCCAGCGGTCCTGCGGGGGGGAGCGGGAGATAGGATAGGTGAGTGATGAGCACGGGAGCGGTTTAGAGTTTTGGGTTTGCCTGTCACAATCAATCTGTCTGCACGGAGAGCCGGGTGACAGCTGAACAGATGCTACAGCCTCCGCGTGCTGTTTAGAGTGAAATACAATAGCTCTATTAGAAGCCTGAGAAAGTCTGTC

Function

GO:

id name namespace
GO:0045202 synapse cellular_component
GO:0016775 phosphotransferase activity, nitrogenous group as acceptor molecular_function
GO:0000155 phosphorelay sensor kinase activity molecular_function
GO:0004673 protein histidine kinase activity molecular_function

KEGG:

id description
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU96198 True 2607 lncRNA 0.42 2 5295678 5298321

Neighbor

gene id symbol gene type direction distance location
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 122422 5143765 ~ 5173256 (+)
ccng1 ccng1,LOC107745080 coding upstream 165121 5123954 ~ 5130557 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 177839 5091878 ~ 5117839 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding upstream 213072 5068901 ~ 5082606 (+)
cfap69 cfap69 coding upstream 228171 5048506 ~ 5067507 (+)
atp10b NA coding downstream 41329 5339650 ~ 5408015 (+)
atp7a atp7a,LOC101485317 coding downstream 132368 5430689 ~ 5476431 (+)
LOC103038898 NA coding downstream 182067 5480388 ~ 5485164 (+)
LOC103044251 NA coding downstream 193101 5491422 ~ 5494564 (+)
LOC103037091 NA coding downstream 398598 5696919 ~ 5731315 (+)
G71294 NA non-coding upstream 88601 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 158111 5133735 ~ 5137567 (+)
G71260 NA non-coding upstream 251920 5001091 ~ 5043758 (+)
G71248 NA non-coding upstream 289453 4958156 ~ 5006225 (+)
G71397 NA non-coding downstream 25348 5323669 ~ 5324887 (+)
G71411 NA non-coding downstream 110710 5409031 ~ 5410313 (+)
G71473 NA non-coding downstream 229675 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 230134 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 304799 5603120 ~ 5603321 (+)
G71247 NA other upstream 315667 4956298 ~ 4980011 (+)
G71249 NA other upstream 327771 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 373858 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 853747 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1720920 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 201587 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 374397 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 572769 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1227320 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1583266 6881587 ~ 6885541 (+)

Expression


Co-expression Network