G71308


Basic Information

Item Value
gene id G71308
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 4936637 ~ 4939375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96202
CTTGCGAGCAAACATCTGCTTATATCTgctattaaaaacacaaatactcTATAAATTCCCAACTATACCTTCAGCATCATGGTTACAGTGGGAAGGTCAGGAGAATCTCTTCACTCTGTGTGTCTGCTGCCCTCCCCTGGAGAAGAACACAGTTCTGGTGTGTTCCTCAAGCTAGCaacgtctctctctcgctcggaTACCTGGGTAAGTCAGATACAAAGGGACAAACACTTACcaaacacacgtacacacactctGGAAATgacagcagcatcagcagcacaCTTCACTTACCACACACCGCAGACAGCAGAGATCTGATCAATAACACAATGAGCTTAGAGAAATTCGACAGGCCCAGAAAGATCAatttaaagcaggaaaaataaaccctgtattttttttaaggttgcTTGCTGGTTTTTTGTCCAGCAGGTGAGAATGTGCACTTCAGAAGCACTGTCAGCTAAGGGTACTGAGTACTGTAAGTAGACCCACTGGAAGTACCTGAATTTCTGCATTGAATATTTAAAGATATCAGTTACTAAAGTTTCACAATAGATACATTTCTCTAGGAGTTTTTCCACTTTTACTGTGCATATTTAGTCATCTTCCCGAAGCAAGTGAACAGACAAATGCACTGCCGCATCAAATTCAATGTTCAAATCCTTTGCAAGAAACATAGCTAAGTTCAGACACTCTGCTTCTGCCTCTTACCAACTATGTTCAGACTGACAGGTCAAATCCGATTTATGACAGATCTAGCTCGTACCCAGATTGTTTTTTCATAACCTGGACAACCAAGAAACTACATGAAACTCATCTTTGGTAAATCAGATAATTTGCGGGTTGCTTAAAATGTGATCAGAATTTAATTTGTACAAATGCATCTCAGTCTGGATGCTCCACTAAGTCACTGATGCCCACCTCAatacagatacagctctggaaaaaaataaagagaacttaaaaatgagttacttaccaaattaaaatacttctggaatataatcaagaggaagatggatgatcacaagccatcaaaccaaacactGCATGAATTTTCATACCAGGAGCAAGGgggtaaagttatccaaaagcagtgtgtaagactggtggaggaaaacatgccaagatgcatgaaaaccgtgattattgcattatttaaggtctgaaagctctgcatcttttttttttatttcactg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96202 True 1206 lncRNA 0.40 2 4936637 4939375

Neighbor

gene id symbol gene type direction distance location
LOC103026470 LOC108435611 coding downstream 473665 4447172 ~ 4462972 (-)
LOC103042532 LOC108442489 coding downstream 1026108 3862118 ~ 3910529 (-)
LOC103024174 LOC108442487 coding downstream 1427641 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 1529206 3362571 ~ 3407431 (-)
tatdn1 tatdn1 coding downstream 1590161 3336209 ~ 3346476 (-)
LOC103041488 NA coding upstream 18730 4958105 ~ 5013867 (-)
LOC111193075 NA coding upstream 22214 4961589 ~ 4975625 (-)
kdm1b kdm1b coding upstream 75497 5014872 ~ 5046137 (-)
nudcd2 nudcd2 coding upstream 191227 5130602 ~ 5137613 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 472341 5411716 ~ 5422882 (-)
G71305 NA non-coding downstream 1592 4933457 ~ 4935045 (-)
G71307 hnrnpr,LOC103029778,LOC107730908,LOC105909056,LOC107703089 non-coding downstream 4470 4911620 ~ 4932167 (-)
G71309 NA non-coding downstream 14818 4919555 ~ 4921819 (-)
G71237 NA non-coding downstream 50176 4886188 ~ 4886461 (-)
G71222 NA non-coding downstream 194124 4695742 ~ 4742513 (-)
G71315 NA non-coding upstream 1533 4940908 ~ 4941780 (-)
G71316 NA non-coding upstream 3928 4943303 ~ 4954873 (-)
G71319 NA non-coding upstream 16921 4956296 ~ 4980099 (-)
G71324 NA non-coding upstream 45632 4985007 ~ 4986652 (-)
G71325 NA non-coding upstream 51546 4990921 ~ 4993129 (-)
trnaw-cca_42 NA other downstream 12566 4924000 ~ 4924071 (-)
G71235 NA other downstream 52149 4882170 ~ 4884488 (-)
G71175 NA other downstream 523626 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1088013 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1232886 3575561 ~ 3703751 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 532291 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 890246 5829621 ~ 5841707 (-)
G71771 NA other upstream 1837864 6777239 ~ 6824756 (-)
G71826 NA other upstream 2117735 7057110 ~ 7057643 (-)
G71862 NA other upstream 2370400 7309775 ~ 7312926 (-)

Expression


Co-expression Network