G71322


Basic Information

Item Value
gene id G71322
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5001076 ~ 5043758 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96232
gaaaacacattgaatgaggtgtgtccaaactattggcctgtactgtattttctttAGAGCCCCTTTCCTGTATATGGATTAAAATGGGAATACTGAACAGattgttcagtattttttccaagtttgtgTTTAATTAGGGCAGCACTGTGTAGTTAgtatttttaccttaaaattaAAGTTTCAAAATCATATAGATGCTTCACTGACTGTAATAGGGAGAGTTTCTACTGCAGGATCAGCACGGCTCCAACTACTATGAAACTTTGGTGAAGTGGGCGCCACAACGCTCATGAGAACCGTATTAGTCTGAGTCTTATAAGTGATATAACTTTACCACCTCAGTCCACGTGCTTCTTTCACTCTCAGTGATGGTTCTTTGTCTCTCAGCTTTAACAGATGAACAGATAGTTTAGAGCAGTATTTCTCAACTCTAATAATGGAGGCACACTGACCTGcatgctttaatttaattttattttatcagcCCATTAAGAGACAATTTCTTGAGCTGAAGTGGGtgtataaaaaacagaaaaagtgctaaaatgtgcagggcagatTGCCCCAGGATCAGGTTTAAGAAACACAAGTACCTTGAATCAACGCCCATTTTATCAGATTCTAATACATAGAAACATGTTAATCCCCATTGTCAGAATTGATTTATTATTGAACattgattttaggttgatttcATTATTGATTCAATGTTATATTTACCTTGTTTATCCTGTGGTTTTACATGCATTGTATACTTTAAACTTTActaacaaatattaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96232 True 782 lncRNA 0.35 2 5001076 5043758

Neighbor

gene id symbol gene type direction distance location
LOC111193075 NA coding downstream 25451 4961589 ~ 4975625 (-)
LOC103026470 LOC108435611 coding downstream 538104 4447172 ~ 4462972 (-)
LOC103042532 LOC108442489 coding downstream 1090547 3862118 ~ 3910529 (-)
LOC103024174 LOC108442487 coding downstream 1492080 3461237 ~ 3508996 (-)
mtss1 mtss1,LOC106569924 coding downstream 1593645 3362571 ~ 3407431 (-)
nudcd2 nudcd2 coding upstream 86844 5130602 ~ 5137613 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 367958 5411716 ~ 5422882 (-)
gstp1 gstp1 coding upstream 456257 5500015 ~ 5511729 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding upstream 488113 5531871 ~ 5596025 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding upstream 727029 5770787 ~ 5800724 (-)
G71325 NA non-coding downstream 7947 4990921 ~ 4993129 (-)
G71324 NA non-coding downstream 14424 4985007 ~ 4986652 (-)
G71319 NA non-coding downstream 20977 4956296 ~ 4980099 (-)
G71316 NA non-coding downstream 46203 4943303 ~ 4954873 (-)
G71315 NA non-coding downstream 59296 4940908 ~ 4941780 (-)
G71338 sfxn1,LOC108275306,LOC108240619,LOC106517750 non-coding upstream 25141 5068899 ~ 5075605 (-)
G71361 NA non-coding upstream 112860 5156618 ~ 5230814 (-)
G71396 NA non-coding upstream 279586 5323344 ~ 5323642 (-)
G71464 gdf9 non-coding upstream 446605 5490363 ~ 5491941 (-)
G71472 NA non-coding upstream 483901 5527659 ~ 5527874 (-)
trnaw-cca_42 NA other downstream 77005 4924000 ~ 4924071 (-)
G71235 NA other downstream 116588 4882170 ~ 4884488 (-)
G71175 NA other downstream 588065 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1152452 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1297325 3575561 ~ 3703751 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 427908 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 785863 5829621 ~ 5841707 (-)
G71771 NA other upstream 1733481 6777239 ~ 6824756 (-)
G71826 NA other upstream 2013352 7057110 ~ 7057643 (-)
G71862 NA other upstream 2266017 7309775 ~ 7312926 (-)

Expression


Co-expression Network