G71338 (sfxn1,LOC108275306,LOC108240619,LOC106517750)


Basic Information

Item Value
gene id G71338
gene name sfxn1,LOC108275306,LOC108240619,LOC106517750
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5068899 ~ 5075605 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96267
GTGATCCCTGACTGCTGGGTCTTTCTGCTCCTCACCTGTAGAAGGTCATCATGCAGCCAGTGATGGTCATGTTCATGGGGACCTGAGCAGACATGCGGCCGATCACCAGCATCTTCTCTCCCCTGTGTCCGGGTGGAACGCAGAGTCAAAAATATACTTCGCCCTCCAGAGTTCATCTTCCGTCAGACCTGGAGACACCACCCCCTTTCTGTAATCCTGAATGATCCTGTGTGCTTTCTCCAGCTGTTCATTGGTCAGGAGGATGTTGCGGGGGTCTGTGACGGTGAAGAAATGCTTCGCTCGGCCTATGAAGGTTCCCTGATCCCAGCGAGGCTCTTTGATGTTTATGGAGGTGGAGATCTCAGCAGCCATGGTGTctacagtaccagtccaGCACACCCAGTCCTCCCAATCACAGCCCTGCCACTGACTCCAGCTGCTGCCCAGCTCATTGAATATTC

Function

symbol description
sfxn1 Predicted to enable serine transmembrane transporter activity. Predicted to be involved in serine import into mitochondrion. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Is expressed in nervous system; pronephric duct; and yolk syncytial layer. Orthologous to human SFXN1 (sideroflexin 1).

NR:

description
PREDICTED: sideroflexin-1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96267 True 461 lncRNA 0.54 3 5068899 5075605

Neighbor

gene id symbol gene type direction distance location
kdm1b kdm1b coding downstream 22762 5014872 ~ 5046137 (-)
LOC103041488 NA coding downstream 55032 4958105 ~ 5013867 (-)
LOC111193075 NA coding downstream 93274 4961589 ~ 4975625 (-)
LOC103026470 LOC108435611 coding downstream 605927 4447172 ~ 4462972 (-)
LOC103042532 LOC108442489 coding downstream 1158370 3862118 ~ 3910529 (-)
nudcd2 nudcd2 coding upstream 54997 5130602 ~ 5137613 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding upstream 336111 5411716 ~ 5422882 (-)
gstp1 gstp1 coding upstream 424410 5500015 ~ 5511729 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding upstream 456266 5531871 ~ 5596025 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding upstream 695182 5770787 ~ 5800724 (-)
G71322 NA non-coding downstream 25141 5001076 ~ 5043758 (-)
G71327 NA non-coding downstream 48218 5019052 ~ 5020681 (-)
G71325 NA non-coding downstream 75770 4990921 ~ 4993129 (-)
G71324 NA non-coding downstream 82247 4985007 ~ 4986652 (-)
G71319 NA non-coding downstream 88800 4956296 ~ 4980099 (-)
G71361 NA non-coding upstream 81013 5156618 ~ 5230814 (-)
G71396 NA non-coding upstream 247739 5323344 ~ 5323642 (-)
G71464 gdf9 non-coding upstream 414758 5490363 ~ 5491941 (-)
G71472 NA non-coding upstream 452054 5527659 ~ 5527874 (-)
G71488 NA non-coding upstream 524109 5599714 ~ 5599952 (-)
trnaw-cca_42 NA other downstream 144828 4924000 ~ 4924071 (-)
G71235 NA other downstream 184411 4882170 ~ 4884488 (-)
G71175 NA other downstream 655888 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1220275 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1365148 3575561 ~ 3703751 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other upstream 396061 5471666 ~ 5476375 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 754016 5829621 ~ 5841707 (-)
G71771 NA other upstream 1701634 6777239 ~ 6824756 (-)
G71826 NA other upstream 1981505 7057110 ~ 7057643 (-)
G71862 NA other upstream 2234170 7309775 ~ 7312926 (-)

Expression


Co-expression Network