G71397


Basic Information

Item Value
gene id G71397
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5323669 ~ 5324887 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96333
tttgtctttatggcagaggtctagctaaataaatacaaatttcacaccacacacactgcactcattctgctgaggtaactattattatttacaagtacatctttacacattactgtaggtagaaaagaaaaaaaaatactaaggaaaatgtatcaaatatactatgtatacaaaatacaaaaacctgcaaaaacaaaacaaaaaacagtcaagCATCACAAATGCAATACAGTAAAATTTTGAATATTCTGTgtcactcccctctctctcctggTCATCTTCCTGGCCATCCATCCACTGCAGTCTCTTTGGCTATAAATTCTCATCAACATCGCAtctgatgtgttctttagcaatgCACTGTGGGAAGAAGCGTTGTGAATGCCTGAGCCACCTGTCAGGTAACAAACTGATGGATTGGTCACCTGTAATGTGGGACACTCCTCCTCgtcaaaacctgctttcacctgttacctactcacctgattgtcatgaatttatgaaatgttccaaaatatgtgtactgtattgtattacaatttcttaaCTCATTTTGACAATTGAGCAGactattctgcagatgatgacttatacgatgaaattgtgctgacatgttttgGAGAGAACAACCATTACACTGAGAACCGACCAATTGGGATAGATCAACAAGATgcattcttttggaaaatgtactaaatgtagaatgattgtgttaagtgtaggctacttgtacataaccatttgcaaagatgtactaagtgcttgagacatgtacaaagcatttgaaatgtgatgaaagcaatgagaaatgccattctgttATGAGGAACCGCAAGTTAGTTTGGGGATTTAtccatgttattttgagaatgtcatctcagtttcaagaaatgagccaaaccaattgagaaaaactgtaaggaATGCCccgtcactagtgatgccacaaagCCAGGAGggggaagactagcacatgcctcctccgatacatgtgaagtcagactccgcctctgcctttttgaactgctgctgatgcagcattgccaaatgGCATCACACCGCgcttggagaaaagcgcagcaactcggttctgatacatcagctcacagaggcagccttgtgctgagagacatcaccctttggagtgatgtagggaaagagcaccatctacccacccagagagagcaaggccaactgtgctctcttagggctccggcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96333 True 1219 lncRNA 0.41 1 5323669 5324887

Neighbor

gene id symbol gene type direction distance location
gabrb2 gabrb2,LOC107554707,LOC107684828 coding upstream 10011 5182503 ~ 5313658 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 150413 5143765 ~ 5173256 (+)
ccng1 ccng1,LOC107745080 coding upstream 193112 5123954 ~ 5130557 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 205830 5091878 ~ 5117839 (+)
LOC103041177 sfxn1,LOC108435595,LOC108275306,LOC107668583,LOC107749734 coding upstream 241063 5068901 ~ 5082606 (+)
atp10b NA coding downstream 14763 5339650 ~ 5408015 (+)
atp7a atp7a,LOC101485317 coding downstream 105802 5430689 ~ 5476431 (+)
LOC103038898 NA coding downstream 155501 5480388 ~ 5485164 (+)
LOC103044251 NA coding downstream 166535 5491422 ~ 5494564 (+)
LOC103037091 NA coding downstream 372032 5696919 ~ 5731315 (+)
G71304 NA non-coding upstream 25348 5295678 ~ 5298321 (+)
G71294 NA non-coding upstream 116592 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 186102 5133735 ~ 5137567 (+)
G71260 NA non-coding upstream 279911 5001091 ~ 5043758 (+)
G71256 NA non-coding upstream 330490 4990852 ~ 4993179 (+)
G71411 NA non-coding downstream 84144 5409031 ~ 5410313 (+)
G71473 NA non-coding downstream 203109 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 203568 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 278233 5603120 ~ 5603321 (+)
G71490 NA non-coding downstream 282831 5607718 ~ 5607946 (+)
G71247 NA other upstream 343658 4956298 ~ 4980011 (+)
G71249 NA other upstream 355762 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 401849 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 881738 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1748911 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 175021 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 347831 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 546203 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1200754 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1556700 6881587 ~ 6885541 (+)

Expression


Co-expression Network