G71411


Basic Information

Item Value
gene id G71411
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5409031 ~ 5410313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96347
GATTCTTCAGTTCTGCCTTTACATAAATTGTTCAGTCTCCAACAATACACCTAACACTGAagtctgtataaaaaaaatacaaacaaaagcaGAGTTGTTCATAGTCGTAGCAGAAAGTAAGAAAAGCCCCTATCAAAAGACAGCTTAATCGTACTGACATTCAATTCACAAAGGAGACAGAACAAAACAGAGTTATGTAATCTCTGCagctgagagaaagagggagagagagtgagggagtaagagagaaagagaaagagagagagagggagcaacgTCTGAGACTTCACCTCTTTTACTTACCATACACACAAAACTGACTCTACCTGTTCTGCTGTGGACCGCCCACACCTACACCCTGCCCTGACTCTGCAcacttctcctccttctcctcctcctccacagctccttcctacttcCTAATCCTGTATGGGGAGAGTGTCAGGGAGGGGTTTAAAAAATGCAGCTGCAGCAAGAGGACACTACAGGACTCTCTCCACTCTCTACTGCAAATGCCTGTCTGAGCTTCATGAATTATTCTGTCAATATCTCCAGCCTGTATCGAGTAAAAGTCAGATTTCTGTGAGGAGGGTGGTCTGCCATTATGTCCGACTCCCTGAAACACAACCTCggttaataaaacataaagtcACATTTCCACTTGAACTGACATCTCATTCCTTTACGCAGCTTGGGGGCcttcaaacaacaaaaaaaggtgaccCCGCCAAAAACATCCCCAGTCCCATCTTCTCTGTCTGTCCAAGATATTGACAGCTCATTTTGGATGGACTTCATGTGTCCTATCCACAgtttttgtccaaaaaaaaaacatgcacaccCAGTCTGGTGTGTCCGTATCATTATGTCCAAGCAAttgtaatgtgtgtatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtttgcatacgTATGTCTGTACttgtacagctctggtaaaaaataagagaccacttaaaaatgatgagtttctttgattttaccaaattgaaaacctctagaatataatcaagagaagctggatgaccacaagccatcaaaccaagcaggagtcgcatacagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaacatgcatgaaaactgtgattaaaaaacagggttattccaccaaatattgatttctaaacttcatgaatattaacttgttttctttgcattatttaaggtttaaaagctctgcatctttgtcatttctttttctgcaaataaatgaactaaatgaca
>TU96348
GATTCTTCAGTTCTGCCTTTACATAAATTGTTCAGTCTCCAACAATACACCTAACACTGAagtctgtataaaaaaaatacaaacaaaagcaGAGTTGTTCATAGTCGTAGCAGAAAGTAAGAAAAGCCCCTATCAAAAGACAGCTTAATCGTACTGACATTCAATTCACAAAGGAGACAGAACAAAACAGAGTTATGTAATCTCTGCagctgagagaaagagggagagagagtgagggagtaagagagaaagagaaagagagagagagggagcaacgTCTGAGACTTCACCTCTTTTACTTACCATACACACAAAACTGACTCTACCTGTTCTGCTGTGGACCGCCCACACCTACACCCTGCCCTGACTCTGCAcacttctcctccttctcctcctcctccacagctccttcctacttcCTAATCCTGTATGGGGAGAGTGTCAGGGAGGGGTTTAAAAAATGCAGCTGCAGCAAGAGGACACTACAGGACTCTCTCCACTCTCTACTGCAAATGCCTGTCTGAGCTTCATGAATTATTCTGTCAATATCTCCAGCCTGTATCGAGTAAAAGTCAGATTTCTGTGAGGAGGGTGGTCTGCCATTATGTCCGACTCCCTGAAACACAACCTCggttaataaaacataaagtcACATTTCCACTTGAACTGACATCTCATTCCTTTACGCAGCTTGGGGGCcttcaaacaacaaaaaaaggtgaccCCGCCAAAAACATCCCCAGTCCCATCTTCTCTGTCTGTCCAAGATATTGACAGCTCATTTTGGATGGACTTCATGTGTCCTATCCACAgtttttgtccaaaaaaaaaacatgcacaccCAGTCTGGTGTGTCCGTATCATTATGTCCAAGCAAttgtaatgtgtgtatgtgtgtgtgtgtgtgtgcgtgtgtgtgtgtttgcatacgTATGTCTGTACttgtacagctctggtaaaaaataagagaccacttaaaaatgatgagtttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96347 True 1283 lncRNA 0.41 1 5409031 5410313
TU96348 False 993 lncRNA 0.43 1 5409031 5410023

Neighbor

gene id symbol gene type direction distance location
atp10b NA coding upstream 1016 5339650 ~ 5408015 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding upstream 95373 5182503 ~ 5313658 (+)
gabra6 gabra6,gabra6a,LOC107554706,LOC108275227,LOC107737791,LOC107684829 coding upstream 235775 5143765 ~ 5173256 (+)
ccng1 ccng1,LOC107745080 coding upstream 278474 5123954 ~ 5130557 (+)
LOC103040455 sept8,LOC108435605,LOC103023804 coding upstream 291192 5091878 ~ 5117839 (+)
atp7a atp7a,LOC101485317 coding downstream 20376 5430689 ~ 5476431 (+)
LOC103038898 NA coding downstream 70075 5480388 ~ 5485164 (+)
LOC103044251 NA coding downstream 81109 5491422 ~ 5494564 (+)
LOC103037091 NA coding downstream 286606 5696919 ~ 5731315 (+)
tmem173 NA coding downstream 551967 5962280 ~ 5987766 (+)
G71397 NA non-coding upstream 84144 5323669 ~ 5324887 (+)
G71304 NA non-coding upstream 110710 5295678 ~ 5298321 (+)
G71294 NA non-coding upstream 201954 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 271464 5133735 ~ 5137567 (+)
G71260 NA non-coding upstream 365273 5001091 ~ 5043758 (+)
G71473 NA non-coding downstream 117683 5527996 ~ 5532969 (+)
G71474 NA non-coding downstream 118142 5528455 ~ 5532295 (+)
G71489 NA non-coding downstream 192807 5603120 ~ 5603321 (+)
G71490 NA non-coding downstream 197405 5607718 ~ 5607946 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding downstream 390090 5800403 ~ 5859364 (+)
G71247 NA other upstream 429020 4956298 ~ 4980011 (+)
G71249 NA other upstream 441124 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 487211 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 967100 4357065 ~ 4441931 (+)
LOC111193071 NA other upstream 1834273 3409670 ~ 3574758 (+)
G71414 gstp1 other downstream 89595 5499908 ~ 5505638 (+)
LOC103037414 NA other downstream 262405 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 460777 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 1115328 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1471274 6881587 ~ 6885541 (+)

Expression


Co-expression Network