G71458 (atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604)


Basic Information

Item Value
gene id G71458
gene name atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5471666 ~ 5476375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96400
acagcTTCAGTCAGACTTCAGCATACGaaaatacaaacacatacacggCAAGAAGAGCAATAAATAACAGCCGAGTGCAGTGAAGCCACGGTAGACTAACTCATAAATGCATTGACTCTGCAGAAGGAGGGAGGCCTACTTCAGTAAACCTGCTCCTCTGTGGCCTTCCAAAAAATCCTTCAAAACAGTGAACACAGTATAAAAGGCACAGTAACACCGCTTCCCCTCTTCTAACTCCcattttctccttcttcttcttcacacaGGGTAATGTGAGAACACGGCGCTGTGAGGAGCGGCCGCGTTTCACGAGGTCATTGTTTTTTAACAAAGGCACATATCCCAGAGGAAAGTCCGCCATCAATACTCATCCGATTCTGAAGGAAAGAAATAAAAGACTACAAGATTTCCGTATCAGCCCACGGCACGTCCCATTTCTTTTGGTCGCCTCACAACCCCCGACCTCCCAGCTCCCACCAGGCCTTGGGAGGGACTGGCTGGCGCAGTGGTACTGGCGGATATGGTGGACAGGACAGGTGGGCAGGTGGATGAGATCTGGGGATGAGACTCCAGGGACTGAGCTTTGGTCTCTCCACTGCTCTGCAGGCACTGAGGTGTGAAAAGAAGCCATGCAGCTCCTGTTGATGAATCATTGGAGCACTGCTGCtcggagccccgccccctcagACCATCTCCTCCTCACAGTGGGCTCCGGCGATGAGCAGCGAGTGTTTATCGGGCTCGCTCAGGGCCATGCTGTTGAGCGAGTGCTTGTCCGAGCGCAGGGAGTTGATGGAGGCTCGGCTGTAGTTGACCAGTCTGTCCAGCAGGCTCAGTTTGGGCGACTGGCGCCGCAGCTCCCCCATGCCGATGTGAACGCTGACGTCTGATAGGCTGCCCTGCCTGCGAAGCCCGGCTAGCTGCAGCTCCAGCTTCTC

Function

symbol description
atp7a Predicted to enable P-type divalent copper transporter activity. Acts upstream of or within response to copper ion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in perinuclear region of cytoplasm and trans-Golgi network. Is expressed in digestive system; gill; locus coeruleus; neural tube; and notochord. Used to study Menkes disease. Human ortholog(s) of this gene implicated in Menkes disease; X-linked distal spinal muscular atrophy 3; cutis laxa; and occipital horn syndrome. Orthologous to human ATP7A (ATPase copper transporting alpha).

NR:

description
PREDICTED: copper-transporting ATPase 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96400 True 938 TUCP 0.54 3 5471666 5476375

Neighbor

gene id symbol gene type direction distance location
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding downstream 48784 5411716 ~ 5422882 (-)
nudcd2 nudcd2 coding downstream 334053 5130602 ~ 5137613 (-)
kdm1b kdm1b coding downstream 425529 5014872 ~ 5046137 (-)
LOC103041488 NA coding downstream 457799 4958105 ~ 5013867 (-)
LOC111193075 NA coding downstream 496041 4961589 ~ 4975625 (-)
gstp1 gstp1 coding upstream 23640 5500015 ~ 5511729 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding upstream 55496 5531871 ~ 5596025 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding upstream 294412 5770787 ~ 5800724 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding upstream 368266 5844641 ~ 5859370 (-)
LOC103032061 LOC108436848,LOC107680293 coding upstream 535844 6012219 ~ 6036754 (-)
G71396 NA non-coding downstream 148024 5323344 ~ 5323642 (-)
G71361 NA non-coding downstream 240852 5156618 ~ 5230814 (-)
G71328 NA non-coding downstream 382205 5028568 ~ 5089461 (-)
G71338 sfxn1,LOC108275306,LOC108240619,LOC106517750 non-coding downstream 396061 5068899 ~ 5075605 (-)
G71322 NA non-coding downstream 427908 5001076 ~ 5043758 (-)
G71464 gdf9 non-coding upstream 13988 5490363 ~ 5491941 (-)
G71472 NA non-coding upstream 51284 5527659 ~ 5527874 (-)
G71488 NA non-coding upstream 123339 5599714 ~ 5599952 (-)
G71496 NA non-coding upstream 166515 5642890 ~ 5678873 (-)
G71501 NA non-coding upstream 203430 5679805 ~ 5680110 (-)
trnaw-cca_42 NA other downstream 547595 4924000 ~ 4924071 (-)
G71235 NA other downstream 587178 4882170 ~ 4884488 (-)
G71175 NA other downstream 1058655 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1623042 3736626 ~ 3848624 (-)
LOC103023864 NA other downstream 1767915 3575561 ~ 3703751 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other upstream 353246 5829621 ~ 5841707 (-)
G71771 NA other upstream 1300864 6777239 ~ 6824756 (-)
G71826 NA other upstream 1580735 7057110 ~ 7057643 (-)
G71862 NA other upstream 1833400 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 2074810 7551185 ~ 7590554 (-)

Expression


Co-expression Network