G71474


Basic Information

Item Value
gene id G71474
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5528455 ~ 5532295 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96417
aaaaaattaagagaccacttcagtttctgaatcagtttctctgattttgctatttatatgtttatgtttgagtaaaatgaacattgtcgttttattctataaactatggacaacattttcaaaaagttttaagagttcagaaatcaatatttggtggaataaccatgttttttatcacagttttcatgcatcttggcatgttctcctccaccagtcgtacacactgcttttggataaatttatgcaaTAGCGGTTCagcctggtttgatggcttgtggtcatcaatctttttctttattttatttaagaaggtttttaatttggtaaaatcaaagaaactcataatttttaagtggtctcttatttttttccagagctgtatgtcctgTTGACTAATGAAGTTAAACAGTTTGACTACAATGAGTATAGGTACATTGGGAAAAAAACAGGTTCAAAATTGAATGGAAAGAACACCTCTTCACCTGTTAAACATGAGGGTGGGTCAACCAAGATTTGGGCTTGTATTGCAGCCAGTGATACAAGGGGATGTTTGTGGACTCAAATCAATTCCAGCACATTCACACCATCTGAGCCATGGCCTTCACAGTTCCTCAACCTGAACATAGCAGAACATCTTTGGAGACACTTCAAAAAAGATGTTCAACAAGATGATACAAGAGTCTCACAGAACTAAAATGCCTGCTtggaagaatgggcaaaaattccAAAAAGATGAATTGAGAGACTCTTAGCTGCTACAATCTGTGATACTTCACAATATGGTGCTACTTAGTCCTGACCATGTAGCATGCCCAAACTTTGGCTTCAGGCCCTTTTACAATATTTGTGTCATtctgaaaatgtaaattatggAAATAATAAACGGAAATACGTCTTAagcctatctggacgggattagtttctcagggggacgtctgtgaaaaatatttcacacttttactcagtgaATCTGGATTGAATCTGgattgcaattaaaaaaaatacaaaaacaggaggaccagtgagtttttaggcttttttgatcacgacatcgcgttcagtagcttctccatttccactcgctgttgtgtttacgtggatctccgtggaaacgtgcacCCAAAACTGTAATTACAATGAATAGCAGttgacaaatagctattttataaaACGCGAGATGACAAAACTTAGAGGTGTGagtctggatgggaataaaattactggaggaccatggagttcagcgaaaaacagtaggtaattcagcctgtaattttttttacttagagaaaatctaagaaaaacacatacatggtcattccaaacggaaataaaatcacagaggacccccccataaaagagaaaattaccccaggaccccctgagaaactaatccgtcTGGACCTGTGAATACTATATGTCTGTGGGCttaaatgtggatgtggttgctttgctttttttagtCACATTGACACTTGTGAATAAAAGTCAGAAGCTGctagtcacaatcattaccttACACcctactgcactgtccactgtaggtggtaatgCCACACAACTTTAGACCAAAAACAGAATGTCCCATTCATCAGGCCTCACTTAAACTCTGATAACTCACATGGACTTCAGGAGGCGCAGGTGTTTAACCTCACTAAtaggataacacctcacaaccaaCACCTGGAAACACcaggtgtgggtgtttccaAGCAGTCCCTGAGGAAACACTTGTGAGATTCATTCACTGtatcaattatttaatattaaagctttAGGTTAATCGCTAACTAAGAAACCTAGCGGTTTGAAAGGGGTTAGGCTTGTTTGGTTTTGCTTTGTTTGGCCTTGACTTTCTATAATAGATCAGTGATCAAAGTGAACTGCTTTCATCCTGTTTGTGTAATGACCTCTGCCTCAGTATTTAACCACAGCCTGCCCCAGACAAATGCATTCAGAAGCTTTATACAAATGATTTGATGACAATATGTAGCATGAAATATTAGTTTAAACAGTGACgcaataaactaaataaactgaaaaaaaaaattataccgTGTGAATGAGGTGGAGAAATTCCCGCAGTGTCATCCTGATTCTTCATGTCGACTCTCTGGGGCAACAGAAGCTGCATTAGCATTCCATTTGCAGAAGGTGGAGATAGCCAAGACTGACTTATCAGGTTTCTGTGTGGTTGGGGCTGCTGTCAGTGCTCCTGAGCTGAGGGCAAAGTTCAGCTGAGAGTCTCAaagaagagcTAGAGTTCAAAAGAGCATGTAACCCACCCCAGTcatatacagtggcgtgaaaaagtatttgccccctacagatttcttttgtttttgctttaatcatactgatatttttctgattatcaaactaactttaatttcagataaagatctgagtaaatataaaaagcactttttaaattataattttatttattaaaggaaacaatctagccctgtgtgaaaaagagtctgccccctaaacctaataacagAACTGTTATTTACAGAGCtggtttaattcagtttaattcaacACATtagaggattttccagcatgaacggTCTGTTTAAGATTATTCACAGCATCtaaatcagactttgactaggccactccaaaaccttcatttttttattttaaattttttattcattcaaaGGTgggcttgtttgtgtgctttgggtcactgtcctgctgcagaacccaagtacacctgagcttgaggtcatgaacagatggtcggatattctccttcaggattgtctggtaaacagcagaattcctgcttccatctattacagcaagttgtccagatcatgaagcagcaaagcagccccagatcatcacactacctccaccatgttttaagtttagtATGATGTATTAGTTTTACGCCAAATGTAACAGGACAGagaccttccaaaaagttccacttttgtctcttCAGTATAAAGAATATTGAACCAGAGTTCTGGGGATCATTATGATGTTTGTTGATAAATGTGAGATGTGTtccttttgtgttctttttggtcagcattgttttttatcttggaattctCCCTTGGAGACCATTTtgacccagtctctttcttattattaaatcattaacactgatcttaactgaggcaagtgagacctgcagttctttaaatgttgttctgggttcttttgtgacctcctggatgagttgttcatgcccttttggagtaatttctgtcggctggtcactcctgtgaaggttcaccagtgttccatctgtttttctttcatctatttttaaatttcttcaatTTGCTTTCTGGTatttgcttcatgttgtcagacaggttctgcttaagtgatttcctgattctacaggtctggcagtaatcaggcctggttgtggttagtagtaaaattgaactcagctttccaacaaatgtgattaatcacagttaatctaTGAGGGGTCAAATATtctttcacacagggctagatgggtttggatagtttttgttcccttaataaatgaaatcataatttaaaaagtgctcttCATATTTACTGTGCAGAGTAATAAATGACACTGAACTAAACCCCTGTGCTAATGTAATGTTAAGGGCTGCTTGATATGTCTGTGTTTACAGATGTGAGACGGGGTCAGTTTATGGAGCATGAACAGGACCCAGGTTGACTTTTTCGCTGAGTTTCTGGATGAGCATGGAGAGCTCCTCTGTAGCCTGAGACTTCTCCTCCAACAGCTCGTAGCGCAGACTGGAGATATCCTGCTTTATCTCCTTCAGCTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96417 True 3799 lncRNA 0.38 2 5528455 5532295

Neighbor

gene id symbol gene type direction distance location
LOC103044251 NA coding upstream 33891 5491422 ~ 5494564 (+)
LOC103038898 NA coding upstream 43291 5480388 ~ 5485164 (+)
atp7a atp7a,LOC101485317 coding upstream 52024 5430689 ~ 5476431 (+)
atp10b NA coding upstream 120440 5339650 ~ 5408015 (+)
gabrb2 gabrb2,LOC107554707,LOC107684828 coding upstream 214797 5182503 ~ 5313658 (+)
LOC103037091 NA coding downstream 164624 5696919 ~ 5731315 (+)
tmem173 NA coding downstream 429985 5962280 ~ 5987766 (+)
LOC103031741 NA coding downstream 476266 6008561 ~ 6011401 (+)
trnaa-agc_14 NA coding downstream 504507 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 505381 6037676 ~ 6037748 (+)
G71411 NA non-coding upstream 118142 5409031 ~ 5410313 (+)
G71397 NA non-coding upstream 203568 5323669 ~ 5324887 (+)
G71304 NA non-coding upstream 230134 5295678 ~ 5298321 (+)
G71294 NA non-coding upstream 321378 5205216 ~ 5207077 (+)
G71287 nudcd2 non-coding upstream 390888 5133735 ~ 5137567 (+)
G71489 NA non-coding downstream 70825 5603120 ~ 5603321 (+)
G71490 NA non-coding downstream 75423 5607718 ~ 5607946 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding downstream 268108 5800403 ~ 5859364 (+)
G71527 NA non-coding downstream 292139 5824434 ~ 5828822 (+)
G71528 LOC103035656,LOC108414340,LOC108274783 non-coding downstream 296593 5828888 ~ 5841703 (+)
G71414 gstp1 other upstream 22817 5499908 ~ 5505638 (+)
G71247 NA other upstream 548444 4956298 ~ 4980011 (+)
G71249 NA other upstream 560548 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 606635 4915813 ~ 4921820 (+)
LOC103028288 LOC108435610,LOC108275213,LOC106520856 other upstream 1086524 4357065 ~ 4441931 (+)
LOC103037414 NA other downstream 140423 5672718 ~ 5678874 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 338795 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 993346 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1349292 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 3336833 8869128 ~ 9036026 (+)

Expression


Co-expression Network