G71528 (LOC103035656,LOC108414340,LOC108274783)


Basic Information

Item Value
gene id G71528
gene name LOC103035656,LOC108414340,LOC108274783
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5828888 ~ 5841703 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96492
ttttctgatttttcccattttttctccTAATTTGGCTATCCAATTATCCCACCCATTTGTGCGTCCCCCTCAcctgcctcctctgacacatgtgaagtcagtcaccccttttttcgaagtgctgctgatgcatcattgccaGAGCGGCTAGCAcaaaaacgcagcgactcggttctgatacatcagctcacagacgcctcatgcTGCCCGGCGCCGACCATGattgggagagagcgccatctaccctccccgagggagcaaggccaacttTTTTCCCTCTGGGCGCCTGCAGCTGATTGCAGAGCTACATGAACGgaaccgctggaccactcgccGCCCCCTAGCCagcattttcttcttttaactTGCATAAATCAATTAGTTTTAGCTCACTGTCCATTCCCTAGTTCTATTTTCACACcccctgggttgccaggtatgaaACAGCAAGCAAACAAAGTGTGCTATGGCCTTAGCATCCTAGAATACTGACAGAGTGCTTGACAGATGGATATAGCTTTGAGcctagaaggactacaagacaaatTTAGAGCTTGCTAATTTTCTCCTGATCAGTTAATAACTAAACTACAGCTAGGGATAGATAACCATAGCTACATAATTTCATAACAACCATTGCTAGGGATGAATATTTTAAGTCCTGCATTGATACTCAGTGGTCTCTGTACATATacatgttatatatgttatcAAGACAGAGTGTGTTTGAGataggtaaagtgatccagactagtgctgcataaaaaaaaaaactcatacatGCTAACATATTGAACTCATTCTGCACTCGTTTGTGTAGGTTTAGTGACTTTAACCTGGCAAACAATGTGAGCTTCACATATAGTTACAACTCTCAGACAACTCCAGTGTCTGAAATTGGACGGCAGTAACCATTTTACACCCTTTCTGTCATTTAGAACATACTGTTTCtttaatattcagattttaaatGTAGTCTAGTTCTTTAGTGCAGGCCTGAGACCAAACACTCTGGTTTAAAGctactttttatttccttttcaaCAGAAGAGAATGGTAGACAACATACTCGAGACTTCTCTGTGAAAGCAGGAAGTGTGCGTCTGTGGTTTGACTTGGTAGCTGCATTAAAGCGGCACAATGCCGACGAGCAAACTGGCTTTCAAAAGCCCTCTATAAACAGTAGAACACACCCAACAAAGAGCttgaaaaaatactgtatttgtgaTTTTAGCATTTCCCAAAATTCTGTACAGTATATGAGAAGATACAGGAATGAGAGGACCCTGTAATGACATGTGGGTATGAATGCACATTCTCATAGAACACATGACCcttaacacatttaacacagcAGCACCAGGCAGGCGGAGCAGATTATGCATCTTTCCTCTTGATGATGAGAGGACCTACGTTGTCTCCGGTCTCCTcattgtgtttagtgtgtgcaCCATCACAGTAGGGGAACTGTGAAGAaACCTTCTTGGACCTCCAGCAGCGGCAGTAGACGGCCTTCTTGCCGATGTCCTCGATGTCGAAGCTGTGCACCACTTTAGCGCTGTCTTTGTTGTGCTCCAGGTTCACTTTGCCCTTGGAGCAGCTCTGTGTGCTGAAGTACCTGGTGAGCAGGAAGGTCCCCACAGCCGCAGTCACTGCAACAGGAACGACGATGATCAGGTGAtcTTAGAGACCCTGAATCCGGAGACCCCCGCCTGGTTGGAGAGTGCTGAGAGCGCGGAAAGCTGCAGGGGCATGGtggaggtgctggagctggTTTATGAGGTGAATGGGAGATTTATATTAgcagagctgaagctgaagctgaagctgatcTACAAGGTCGCTGCCCGGATCTCCCTCTCTCCGCTCTGACACTGCGTAACTCTACCGCCAACGTCAC

Function

NR:

description
CDGSH iron-sulfur domain-containing protein 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96492 True 1900 lncRNA 0.46 3 5828888 5841703

Neighbor

gene id symbol gene type direction distance location
LOC103037091 NA coding upstream 97573 5696919 ~ 5731315 (+)
LOC103044251 NA coding upstream 334324 5491422 ~ 5494564 (+)
LOC103038898 NA coding upstream 343724 5480388 ~ 5485164 (+)
atp7a atp7a,LOC101485317 coding upstream 352457 5430689 ~ 5476431 (+)
atp10b NA coding upstream 420873 5339650 ~ 5408015 (+)
tmem173 NA coding downstream 120577 5962280 ~ 5987766 (+)
LOC103031741 NA coding downstream 166858 6008561 ~ 6011401 (+)
trnaa-agc_14 NA coding downstream 195099 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 195973 6037676 ~ 6037748 (+)
LOC103031423 NA coding downstream 430513 6272216 ~ 6291384 (+)
G71527 NA non-coding upstream 66 5824434 ~ 5828822 (+)
G71490 NA non-coding upstream 220942 5607718 ~ 5607946 (+)
G71489 NA non-coding upstream 225567 5603120 ~ 5603321 (+)
G71473 NA non-coding upstream 295919 5527996 ~ 5532969 (+)
G71474 NA non-coding upstream 296593 5528455 ~ 5532295 (+)
G71567 NA non-coding downstream 124851 5966554 ~ 6018103 (+)
G71566 NA non-coding downstream 170519 6012222 ~ 6014382 (+)
G71608 brd8,LOC107758534 non-coding downstream 190482 6032185 ~ 6036659 (+)
G71611 NA non-coding downstream 244871 6086574 ~ 6086987 (+)
G71613 NA non-coding downstream 312178 6153881 ~ 6157418 (+)
LOC103037414 NA other upstream 150014 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 323250 5499908 ~ 5505638 (+)
G71247 NA other upstream 848877 4956298 ~ 4980011 (+)
G71249 NA other upstream 860981 4963702 ~ 4967907 (+)
atpif1 atpif1,LOC105912502,LOC107571275,LOC104922170,LOC107730904,LOC103378180 other upstream 907068 4915813 ~ 4921820 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other downstream 29387 5871090 ~ 5957019 (+)
G71682 LOC108430946,LOC108416517 other downstream 683938 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 1039884 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 3027425 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 3301196 9142899 ~ 9149419 (+)

Expression


Co-expression Network