LOC103035656 (LOC103035656,LOC108414340,LOC108274783)


Basic Information

Item Value
gene id LOC103035656
gene name LOC103035656,LOC108414340,LOC108274783
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5829621 ~ 5841707 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96529
AGTTACGCAGTGTCAGAGCGGAGAGAGGGAGATCCGGGCAGCGACCTTGTAgatcagcttcagcttcagcttcagctctgcTAATATAAATCTCCCATTCACCTCATAAAccagctccagcacctccaCCATGCCCCTGCAGCTTTCCGCGCTCTCAGCACTCTCCAACCAGGCGGGGGTCTCCGGATTCAGGGTCTCTAAAGTGACTGCGGCTGTGGGGACCTTCCTGCTCACCAGGTACTTCAGCACACAGAGCTGCTCCAAGGGCAAAGTGAACCTGGAGCACAACAAAGACAGCGCTAAAGTGGTGCACAGCTTCGACATCGAGGACATCGGCAAGAAGGCCGTCTACTGCCGCTGCTGGAGGTCCAAGAAGTTCCCCTACTGTGATGGtgcacacactaaacacaatgAGGAGACCGGAGACAACGTAGGTCCTCTCATCATCAAGAGGAAAGATGCATAATCTGCTCCGCCTGCCTGGTGCTgctgtgttaaatgtgttaagGGTCATGTGTTCTATGAGAATGTGCATTCATACCCACATGTCATTACAGGGTCCTCTCATTCCTGTATCTTCTCATATACTGTACAGAATTTTGGGAAATGCTAAAAtcacaaatacagtattttttcaaGCTCTTTGTTGGGTGTGTTCTACTGTTTATAGAGGGCTTTTGAAAGCCAGTTTGCTCGTCGGCATTGTGCCGCTTTAATGCAGCTACCAAGTCAAACCACAGACGCACACTTCCTGCTTTCACAGAGAAGTCTCGAGTATGTTGTCTACCATTCTCTTCTGttgaaaaggaaataaaaagtagCTTTAAACCAGAGTGTTTGGTCTCAGGCCTGCACTAAAGAACTAGACTACatttaaaatctgaatattaaaGAAACAGTATGTTCTAAATGACAGAAAGGGTGTAAAATGGTTACTGCCGTCCAATTTCAGACACTGGAGTTGTCTGAGAGTTGTAACTATATGTGAAGCTCACATTGTTTGCCAGGTTAAAGTCACTAAACCTACACAAACGAGTGCAGAATGAGTTCAATATGTTAGCatgtatgagtttttttttttatgcagcactagtctggatcactttacct
>XM_007253616.3
GGTGGTGACGTTGGCGGTAGAGTTACGCAGTGTCAGAGCGGAGAGAGGGAGATCCGGGCAGCGACCTTGTAgatcagcttcagcttcagcttcagctctgcTAATATAAATCTCCCATTCACCTCATAAAccagctccagcacctccaCCATGCCCCTGCAGCTTTCCGCGCTCTCAGCACTCTCCAACCAGGCGGGGGTCTCCGGATTCAGGGTCTCTAAAGaTCACCTGATCATCGTCGTTCCTGTTGCAGTGACTGCGGCTGTGGGGACCTTCCTGCTCACCAGGTACTTCAGCACACAGAGCTGCTCCAAGGGCAAAGTGAACCTGGAGCACAACAAAGACAGCGCTAAAGTGGTGCACAGCTTCGACATCGAGGACATCGGCAAGAAGGCCGTCTACTGCCGCTGCTGGAGGTCCAAGAAGTTCCCCTACTGTGATGGtgcacacactaaacacaatgAGGAGACCGGAGACAACGTAGGTCCTCTCATCATCAAGAGGAAAGATGCATAATCTGCTCCGCCTGCCTGGTGCTgctgtgttaaatgtgttaagGGTCATGTGTTCTATGAGAATGTGCATTCATACCCACATGTCATTACAGGGTCCTCTCATTCCTGTATCTTCTCATATACTGTACAGAATTTTGGGAAATGCTAAAAtcacaaatacagtattttttcaaGCTC
>XM_007253617.3
TACGCAGTGTCAGAGCGGAGAGAGGGAGATCCGGGCAGCGACCTTGTAgatcagcttcagcttcagcttcagctctgcTAATATAAATCTCCCATTCACCTCATAAAccagctccagcacctccaCCATGCCCCTGCAGCTTTCCGCGCTCTCAGCACTCTCCAACCAGGCGGGGGTCTCCGGATTCAGGGTCTCTAAAGTGACTGCGGCTGTGGGGACCTTCCTGCTCACCAGGTACTTCAGCACACAGAGCTGCTCCAAGGGCAAAGTGAACCTGGAGCACAACAAAGACAGCGCTAAAGTGGTGCACAGCTTCGACATCGAGGACATCGGCAAGAAGGCCGTCTACTGCCGCTGCTGGAGGTCCAAGAAGTTCCCCTACTGTGATGGtgcacacactaaacacaatgAGGAGACCGGAGACAACGTAGGTCCTCTCATCATCAAGAGGAAAGATGCATAATCTGCTCCGCCTGCCTGGTGCTgctgtgttaaatgtgttaagGGTCATGTGTTCTATGAGAATGTGCATTCATACCCACATGTCATTACAGGGTCCTCTCATTCCTGTATCTTCTCATATACTGTACAGAATTTTGGGAAATGCTAAAAtcacaaatacagtattttttcaaGCTC

Function

NR:

description
CDGSH iron-sulfur domain-containing protein 1-like isoform X2

GO:

id name namespace
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0051537 2 iron, 2 sulfur cluster binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96529 True 1110 TUCP 0.46 3 5829621 5841687
XM_007253616.3 False 692 mRNA 0.51 3 5830089 5841707
XM_007253617.3 False 639 mRNA 0.51 3 5830089 5841684

Neighbor

gene id symbol gene type direction distance location
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 28897 5770787 ~ 5800724 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding downstream 233596 5531871 ~ 5596025 (-)
gstp1 gstp1 coding downstream 317892 5500015 ~ 5511729 (-)
LOC103044536 LOC108435599,LOC564855,LOC107684857,LOC103391210,LOC103359223 coding downstream 406739 5411716 ~ 5422882 (-)
nudcd2 nudcd2 coding downstream 692008 5130602 ~ 5137613 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding upstream 2934 5844641 ~ 5859370 (-)
LOC103032061 LOC108436848,LOC107680293 coding upstream 170512 6012219 ~ 6036754 (-)
LOC103043333 LOC108442486,LOC108275354 coding upstream 319948 6161655 ~ 6221853 (-)
hars hars,LOC106611772,LOC107660169 coding upstream 451977 6293684 ~ 6315841 (-)
LOC103036141 LOC108430946 coding upstream 680350 6522057 ~ 6538782 (-)
G71501 NA non-coding downstream 149511 5679805 ~ 5680110 (-)
G71496 NA non-coding downstream 150748 5642890 ~ 5678873 (-)
G71488 NA non-coding downstream 229669 5599714 ~ 5599952 (-)
G71472 NA non-coding downstream 301747 5527659 ~ 5527874 (-)
G71464 gdf9 non-coding downstream 337680 5490363 ~ 5491941 (-)
G71554 NA non-coding upstream 24598 5866305 ~ 5866528 (-)
G71577 NA non-coding upstream 112913 5954620 ~ 5967921 (-)
G71612 NA non-coding upstream 245132 6086839 ~ 6087111 (-)
G71636 NA non-coding upstream 312184 6153891 ~ 6178020 (-)
G71644 NA non-coding upstream 430544 6272251 ~ 6291512 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 353246 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 905550 4924000 ~ 4924071 (-)
G71235 NA other downstream 945133 4882170 ~ 4884488 (-)
G71175 NA other downstream 1416610 4411948 ~ 4413011 (-)
LOC103042226 LOC108274609,LOC107701883,LOC100536156,LOC107747745,LOC107574915,LOC108442488 other downstream 1980997 3736626 ~ 3848624 (-)
G71771 NA other upstream 935532 6777239 ~ 6824756 (-)
G71826 NA other upstream 1215403 7057110 ~ 7057643 (-)
G71862 NA other upstream 1468068 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1709478 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1932188 7773895 ~ 7842280 (-)

Expression


Co-expression Network