CI01000009_04196309_04197268 (DNAJC28)


Basic Information

Item Value
gene id CI01000009_04196309_04197268
gene name DNAJC28
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 4196309 ~ 4197268 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_04196309_04197268.mRNA
ATGAGCTGCTGGGTATTGTTACGGTTACACAGCGGGGACCTTCGCATTTCCCTCCTGCCTCTGTGCTGTTCCCTCAGCCTGCGAGCCCTCAGCTCTGGAGCTATCAGCCGCAGCTTGAAAGGGAGCTACCGTCTGCTGCAGCTGCCTGATGATGGAGCCAGCAGCCCTACAGAGATCAAGGAGGCTTACCTACGCATGGCCAAGCTCTACCATCCAGATTCCGGTGCTCCCACGGCAGATGCGGCTCTTTTTTCCCAGATAGAGGAGGCCTATCGGGCTGTGCTTGCCCACCTCGGCCGGCAGAAGTCGGCCTCGCAGTACACCCAATCGCTGGAGGAAGAAGAGGAAGATAAAGTTAGAGGTAATGCCCCTCAACACAGACATTACCTCAGTTTTGAAGGAGTTGGTTCTGGCACTCCCAGTCAAAGAGAACGACAGTACCGGCAGTTTCGCGTTGACCGCGCCACCGACCAGGTTCTGGAGTACAGACGCAAGGAGATGGAGAAGGCGGCAGCGGAAGAAGGAGCCATGGTGACCCGGGATGCACGCTTGCGCAGCAAGCAGATCAAAATCACTCAGGCAGTAGAGAGGCTGGTTGAGGACCTCATCCAGGAGTCTATGGCCCGTGGAGACTTCCAGAACCTCAGTGGCACCGGCAAACTGCTCAACAAGTTTGATCATAACCCGTATATGGACCCCATGACGCACAACCTCAACAGAATACTCATCGACAACGGTTACCAGCCTGAATGGATTGTGGCACAGAAGGAGATCAGGGAAACCATTGCTAAAATGAGGGAGAGGTTGCAGGAGGTCAGGGCCAGGCTGGGGGAACCCATGAGACAATCTGAAACCCTCCAGTGGAAGGAGCACTGCGCTGTGTTTGCTGATGAACTGGGGAAACTCAATAAGAAAGTGGACAATTTCAACCTGATTGTCCCTTTAATGAGCAGGCAGATG

Function

symbol description
dnajc28 Predicted to be involved in Golgi organization; Golgi vesicle prefusion complex stabilization; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Predicted to be part of Golgi transport complex. Orthologous to human DNAJC28 (DnaJ heat shock protein family (Hsp40) member C28).

GO:

id name namespace
GO:0048213 Golgi vesicle prefusion complex stabilization biological_process

KEGG:

id description
K19373 DNAJC28; DnaJ homolog subfamily C member 28

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_04196309_04197268.mRNA True 960 mRNA 0.55 1 4196309 4197268

Neighbor

gene id symbol gene type direction distance location
CI01000009_04069741_04071278 NA coding downstream 124705 4069714 ~ 4071604 (-)
CI01000009_04015167_04016764 NA coding downstream 179472 4015005 ~ 4016837 (-)
CI01000009_03791699_03858262 NCAM2 coding downstream 337075 3790698 ~ 3859234 (-)
CI01000009_03770045_03770497 NA coding downstream 425812 3769910 ~ 3770497 (-)
CI01000009_03699312_03715114 APP, APPB, APPA coding downstream 481195 3699312 ~ 3715114 (-)
CI01000009_04738315_04741396 RALB.S, RALBA, RALB.L, RALB coding upstream 540961 4738229 ~ 4742426 (-)
CI01000009_04778332_04780190 NA coding upstream 580785 4778053 ~ 4786216 (-)
CI01000009_04888729_04895882 NA coding upstream 690929 4888197 ~ 4896479 (-)
CI01000009_04976520_04987680 NA coding upstream 779218 4976486 ~ 4987707 (-)
CI01000009_05046374_05094978 SEMA5B, SEMA5BA coding upstream 849032 5046300 ~ 5095973 (-)
G52831 NA non-coding downstream 88939 4107147 ~ 4107370 (-)
G52773 NA non-coding downstream 132648 4063231 ~ 4063661 (-)
G52770 NA non-coding downstream 148048 4047823 ~ 4048261 (-)
G52743 NA non-coding downstream 452756 3743327 ~ 3743553 (-)
G52739 NA non-coding downstream 460170 3735823 ~ 3736139 (-)
G52878 NA non-coding upstream 84077 4281345 ~ 4281805 (-)
G52995 NA non-coding upstream 130218 4327486 ~ 4327685 (-)
G53002 NA non-coding upstream 162319 4359587 ~ 4479642 (-)
G53007 NA non-coding upstream 174154 4371422 ~ 4414015 (-)
G53048 NA non-coding upstream 282430 4479698 ~ 4512678 (-)
CI01000009_03261739_03262843 NA other downstream 934352 3261038 ~ 3262843 (-)
CI01000009_02885473_02893975 NA other downstream 1296902 2883688 ~ 2893975 (-)
G52410 NA other downstream 1633776 2551724 ~ 2562533 (-)
G52098 NA other downstream 2788682 1401932 ~ 1407627 (-)
G52828 NA other upstream 20152 4217420 ~ 4231469 (-)
G53515 NA other upstream 1305127 5502395 ~ 5505248 (-)
G55814 NA other upstream 4228553 8425821 ~ 8428012 (-)
CI01000009_08858198_08860555 NA other upstream 4660884 8856310 ~ 8860563 (-)
G59097 NA other upstream 8090949 12288217 ~ 12289518 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_038018 dnajc28 coding NC_007120.7 CM002893.2 35872698 ~ 35875051 (-)