G71567


Basic Information

Item Value
gene id G71567
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 5966554 ~ 6018103 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96551
ataaagttttaagagttcagaaatcaatatttggtggaataaccatgttttttaatcacagtttttatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgcctctcctggtgcaaaaattaaagcaattcagcttggtttgatggcttgtgatcatccatcttccacttgattatattcctgaggttttaagtttggtaaaatcaaagaaactcataatttttaagtggtctcttattttttacagagctgtatattactgGGATATATTAAACAGCAAGTGAACACTTTGAGCTTAGAGGCATTATTAAGTAAGTGGTagtaatgttatggctgactgTCCGACCACTATAAAGATAATTACTTTCATTTGAATGAATAAggaatataagaaatatatattttaaggagCTAATTAATTGTTAAGTATTTTATACattcaaacataaaacatgaCTTAAAAAGTTCTTAGTCAATTTTTACAATATCAGATGCATGTAATGTTTGTacgtgtttttgttttgtttgtgttattGGACCCCTTGAAAATGGAGATGCAACATCTAAAGATGTTCTAGTAATAATATAAACTGTTATCAAAGGGCACTCACTCTGTTCAAAACTATTACCCATATCTTGTACTTAGTACTGATGACATAAATTGTACACCTGTGTACTCTCTTAAGTGTAAACCCTGTGTGTTTTGAAACGCTTATACACGTGTGCGTCtgtgcaggagagagagagagaaaagagagagagagagaaaaggaaagacagGATTTAGGGGGGCAGAGAGCAAAGCCGTAACCTGGATActtacaaaaagagagagaaggaaagcaGGAGAGGCCATGGGGAGACTGTCCTGTAGGAGGACAAACAGcagtgagaaagagacacacgcacacacacacactctcactcgcTTCTGCAACTCAGgccatcaacacacacacagaccatcTTTCACCTACAGGAACATACAAACAAAACTACAAATACACAGACATTCCAGGCttacagacagagctgaagcagACAGAATTTTTGCAAAAGTGATCTACAAGGTGATTTCTGAGTGTCTGGATTTCAGCACACAAAAACAGAAGCATAGCACTTCTAATAATAAAGGAAATATGAAACTGAAACCAGTTAGATTCACaacaatgtataaaaataactgGTCCCAACTAACATTTACTCTTTATTAGCTGTGCTAATAGTGACATTTCGAGAGGCTTCCAGCTGCAGCTTCACAGACAAAGCCCTTGGTTGCTCAGAAGCATTGTGCTGGGTGGAATTGAGGCCTGTGGCTGGATGggagtaatatttaatataatctttaatataaaagctcCAGATAGCCTTAAAAACActactattttctttttttcattttcatagtCCATTTAAATCAATACAGTATAAACCAAATATAGAAAATTAGCactctgtaaaaaaattgataaaaaatggtaaattgAAGTGTATTATAGTATAAATGGATGCATGTATTGTCTCAGTAAAACAagtttttaagttgtttttattaagtttaaagcaacagtcctTTAGAAtgctttcttttaaattaaatgcattaatattttGTGGGGAAGCGACTAAATATTCTAATAAACAGCATCAGTGCGCTTCTGCAAAGCAAACTATATTAAGTCTAATACTGGGTTTGCTTAGAGTTTTTCTGAGCACAACCGCTTTAGCTGGTTACCCAAGCAACCACagtgctgctaatggtgctgtTACAAGAAATACTGTGAACATAGAGATATCAGATTCCCAAAACTCAGTCTTCATCTGCTCATTCACTTATTATTAAACCAGAGAAATGCAAAATTAGAACAGAATAGAGATGGGGAGATTAAACCGAGCACAACAGAATCTGATGAATCCATAAAATTCATCCCGTCTGAAaagatcaatatttttttttagcatgctTAGTGCAATCAAACATTTGCACCAAATACTTAGAGACTGTCTTTTTAGTTAGCACGGGACTCAACTAGCTgtagtttgtttttgtgtgtgtaatttacaGTTACAAGGCTTTTCACACTAATGCAATGGAGTCGATtgactctttttaaaaatgtttcaggACCTCACATTCatatttcaatcaatcaatgacCAAACTCCTTGTTTATAACACCTCTGGCGAAGCTGCAGCTGGATGCTAATAAACATTTGTGGGTGAAAGCAAGCAACGTCACAAAACACGGAGCAAGCTAGGCATCTCTAGCAGCAGAGAATCAGAAGaaagctcacacacacaagctaGTGTTAGTCCACAGCAGGTTATAGACGAACACAGAGACAAGCGCAGGTAAAGGTGGGACAGAAATACAggtgaaacagagagaaagctTGGACTGATCCATGTGATCTGTATGTGTAACATGTCTGTCACTGTATGTGATGAAATCGCTCACGTGCACATTCTGTGAAAGAGGACTCAATGAGTGAATCATGAGGGGGTGCTGGGGTATTGCGCTGGTTGAGAAAGTAGGAGGTAAGGTGTTAAGACTGTACAATTTCCACAAAGACTGACAAATAACACAACCTAAAAACATGGCATAAATAACCACGATGGGCCTGGATTCCCAAAAGCTTTGTGGTAATCAGATTATCTTatctcacagagagagagagagagagagagagagagagaagccacAACTGAGAGAGCAGTTCTAGCACAGCTGACGGTTTTGTTTTGACACAAAGCTGGTTCAAAGCCTCACACTTTAATAATAAGGGTTTCAAATATTAAACTACACTGTTGCTGAAATTGTtacaaatagaaagaaattgAACTAAAATTAGCACTCAAACTCCCTAATTTGTCCATATGATAAACACGGTCATTCCAGTATACAGTGAGGAAATTAAGCATTTGAACACCCTgtgaataatttatttgtgtgttactgctgcaaataagTAAGTATTTGAAAACCTGTGAAAATCAATGTTAATATTTAGTACAGTAGTCTTTGTTTGCGATTATAAAGGTCCTGTAGTTTTTCACCAGGtttgcacacactgcagcagggattTTGGCCCATTCCTCCACACAGATCTTCTCCAGATCAGCCAGGTTTCTGGGCTGTCGCTGAGAAAACAGAGATTGAGCTCCCTTCAAAGATTTTCTACAGTGTTTAGGTCTGGATACTGGCTAGGCCTActtattt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96551 True 3245 lncRNA 0.37 3 5966554 6018103

Neighbor

gene id symbol gene type direction distance location
LOC103037091 NA coding upstream 235239 5696919 ~ 5731315 (+)
LOC103044251 NA coding upstream 471990 5491422 ~ 5494564 (+)
LOC103038898 NA coding upstream 481390 5480388 ~ 5485164 (+)
atp7a atp7a,LOC101485317 coding upstream 490123 5430689 ~ 5476431 (+)
atp10b NA coding upstream 558539 5339650 ~ 5408015 (+)
trnaa-agc_14 NA coding downstream 18699 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 19573 6037676 ~ 6037748 (+)
LOC103031423 NA coding downstream 254113 6272216 ~ 6291384 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding downstream 300217 6318320 ~ 6344698 (+)
LOC103029834 LOC108430996 coding downstream 335536 6353639 ~ 6372363 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding upstream 107190 5800403 ~ 5859364 (+)
G71528 LOC103035656,LOC108414340,LOC108274783 non-coding upstream 124851 5828888 ~ 5841703 (+)
G71527 NA non-coding upstream 137732 5824434 ~ 5828822 (+)
G71490 NA non-coding upstream 358608 5607718 ~ 5607946 (+)
G71489 NA non-coding upstream 363233 5603120 ~ 5603321 (+)
G71608 brd8,LOC107758534 non-coding downstream 14082 6032185 ~ 6036659 (+)
G71611 NA non-coding downstream 68471 6086574 ~ 6086987 (+)
G71613 NA non-coding downstream 135778 6153881 ~ 6157418 (+)
G71628 NA non-coding downstream 327131 6345234 ~ 6345715 (+)
LOC111193077 NA non-coding downstream 621563 6639666 ~ 6662003 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 9535 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 287680 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 460916 5499908 ~ 5505638 (+)
G71247 NA other upstream 986543 4956298 ~ 4980011 (+)
G71249 NA other upstream 998647 4963702 ~ 4967907 (+)
G71682 LOC108430946,LOC108416517 other downstream 507538 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 863484 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2851025 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 3124796 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3950403 9968506 ~ 9970042 (+)

Expression


Co-expression Network