G71608 (brd8,LOC107758534)


Basic Information

Item Value
gene id G71608
gene name brd8,LOC107758534
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6032185 ~ 6036659 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96619
CCTGATAGGCCGCCTCTGTTGCTCTCCTCTTCTGCTCAGCCTCATCCTCCTCCTGCTTCTTCTTTTGTTCAATATCCCCCCATAACTCCTCCAGTTTGGAGTCCATGTGACCTGCCTGAATCAAATCTACTTCCTTCTTcagttttCTGTATTTCTCCTGAGTGTCTTTGAGGAGCTTCTTGAGCTCATCAATCCTCTCAGTAGTCAGCCTGCGCACAATAACATCCTCAATAGTCTCCACCACCTCTCCTTTTTCACCACGCTTGCGCTTAGGGGCTTCAGTGGTCTCCAACAGCTCTGAATATTGAGAGGCACAGTGCTTCTGAGAAAACCAGTCCGGAGGACGTCCAGACTCTGAAAATGGCTTGATAGCTCTGCTGACGGacaccCAATTTTGATCTCCACTTCTCATCACAGAGGATGCAAGGCACAGTTTCTCCCGGATGGACCATGGCTCTGTTGGTCCCAGGGACATCATTTTGTGTTTTCCCACTCCGCTC

Function

symbol description
brd8 Enables nuclear receptor coactivator activity and thyroid hormone receptor binding activity. Involved in cellular response to thyroid hormone stimulus; histone acetylation; and positive regulation of transcription by RNA polymerase II. Located in mitochondrion and nucleoplasm. Part of NuA4 histone acetyltransferase complex and Swr1 complex.

NR:

description
PREDICTED: bromodomain-containing protein 8 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96619 True 500 lncRNA 0.50 7 6032185 6036659

Neighbor

gene id symbol gene type direction distance location
LOC103031741 NA coding upstream 20784 6008561 ~ 6011401 (+)
tmem173 NA coding upstream 44419 5962280 ~ 5987766 (+)
LOC103037091 NA coding upstream 300870 5696919 ~ 5731315 (+)
LOC103044251 NA coding upstream 537621 5491422 ~ 5494564 (+)
LOC103038898 NA coding upstream 547021 5480388 ~ 5485164 (+)
trnaa-agc_14 NA coding downstream 143 6036802 ~ 6036874 (+)
trnaa-agc_15 NA coding downstream 1017 6037676 ~ 6037748 (+)
LOC103031423 NA coding downstream 235557 6272216 ~ 6291384 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding downstream 281661 6318320 ~ 6344698 (+)
LOC103029834 LOC108430996 coding downstream 316980 6353639 ~ 6372363 (+)
G71567 NA non-coding upstream 14082 5966554 ~ 6018103 (+)
G71566 NA non-coding upstream 17803 6012222 ~ 6014382 (+)
G71518 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 non-coding upstream 172821 5800403 ~ 5859364 (+)
G71528 LOC103035656,LOC108414340,LOC108274783 non-coding upstream 190482 5828888 ~ 5841703 (+)
G71527 NA non-coding upstream 203363 5824434 ~ 5828822 (+)
G71611 NA non-coding downstream 49915 6086574 ~ 6086987 (+)
G71613 NA non-coding downstream 117222 6153881 ~ 6157418 (+)
G71628 NA non-coding downstream 308575 6345234 ~ 6345715 (+)
LOC111193077 NA non-coding downstream 603007 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 830389 6867048 ~ 6868404 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 75166 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 353311 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 526547 5499908 ~ 5505638 (+)
G71247 NA other upstream 1052174 4956298 ~ 4980011 (+)
G71682 LOC108430946,LOC108416517 other downstream 488982 6525641 ~ 6538794 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 844928 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2832469 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 3106240 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3931847 9968506 ~ 9970042 (+)

Expression


Co-expression Network