G71644


Basic Information

Item Value
gene id G71644
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6272251 ~ 6291512 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96681
CCTGTAGTTGAAGTGGAGGAAGCCATCAGGGCCTGTGTGGTGGTAGCGCACGTCATACAGCGGCACACCAATTCCATACAGCTCACAAAGCCACTTTAGCTGGCTCACTGCATCATGGGATGACAAAGAGGGCCTCACTGCAGTCACAGGTGCCATTCCATTTCTCACCTGGGGGCCCGGACTCCCAACAGCCTGTGGGAACTGCTGTTTATACTGAGGAGGTGGAGAAAGCAGAGCATtcaaaggagaaagagagggaggtggaggaggacgaagagaaggaggaggagtaggaagaAGAGGGTCTAGATAATTGGAGAGCTGGGTGGGGCGGTTGATCTGGAAGCGGGGAGGCAGTGGAGAAGGCTTAACTGGAGGTTTCAGACCAGGAGGGTTCAGGGGGTTCTGGTCAAGATGCTCCTCCTGCCTGGACTTGGAGCCACTGGTCATCCATCGCACGGAGATGCAGATGCCCAACTGCTTCTTAAATCCTTGCACCAGCACCTTCTTGGCCATGGAAGCAGCGTAGTGAGAGGAGTAGTGGACGAGTGCACAGACCTCCTTTCCTTTGGGCCCAGCAGCCTTTATAGTGGCTCCCTCAACCCCATCTGAGAGCATCCGGAGGACCATCAGCAGCTCCCCTCGGCCCATGGAGGCGGGCAGATCGGCCAGCCACAGCTGCCTCTTCTCCGTGCTCTTCCTGACCACCAGCCGCACCCCCTCCTGCAGTTGGTAATGGTTCAGGGTCTGGATGGCAGCAGTCGCGCCCGCAGGGGTTCCGTACTTGGCGTACGCGAAGCCGCGGTTCTGCCCACTGAAGTTCATCATGAGGCGAAACTCATAGAGCGGTGCCACGCTCAGGAACAGCGGGATCAGCTGATCCTCGTACACATCCCGCGGAATCTGACTGATAAACACCTCACAGCCTGGACCGGGATGAGGACCTCTCCAGTCAGGAGGAGGACCGCCATATTTCCTCTGGCCGTTGATCTGGGTTAAAGTGATGGAGGTAGTCTTCAGCCATTCTTCCAGAGCTCTCACTCTAAGTGGGTTcagaacCTGTACAACTACTCCCTCCATTTTTGCTCCTTCACTGATTCCAGCTTCTCCTTCAAC
>TU96682
GCAAGTTGTCAAACTGacccatcaataaaaaaaaaaaaaacaatatctggAACCCAGTCATGaaccttttttatattagtgtaaatactgacaaaataaagcacaaaaaaataaatccaaaaatactcttttttttttaaacacgaCACAAAACAAACCACAACCAAACCAGTCAATTCAAAAGTGTGAAATCAAACAcatgcaaacaaaaacacaaagaaaatcagGTCTCATGCTGATATGAAAAAAAGTGCAAACAGTACAAACGAAGATACAAcacacaaataatattttttctaattaaaacattataaaacatcatatcaaaagataaaacaaaacatcagGTAATTGAGTAAGAACTGAACCATCTCAGCCATCTCTGATTCAAACACTACATGCTTTCTGAGATCAATACTGAACACAAAACTGGTAATGCATTAAACGCGGGCCGCGACCTTTAGGACTGCTGACACATGGTTTTGATGACCTGCTCAGCAGTGGCCCGCTGGACCTCTTCCTCCATGCTGGAGATGCTGGGGCCGGGCAGAACCTGAACAGACCCACACAGCGGGATGGGCAGCTGGGGGATAATGACCTGTAGTTGAAGTGGAGGAAGCCATCAGGGCCTGTGTGGTGGTAGCGCACGTCATACAGCGGCACACCAATTCCATACAGCTCACAAAGCCACTTTAGCTGGCTCACTGCATCATGGGATGACAAAGAGGGCCTCACTGCAGTCACAGGTGCCATTCCATTTCTCACCTGGGGGCCCGGACTCCCAACAGCCTGTGGGAACTGCTGTTTATACTGAGGAGGTGGAGAAAGCAGAGCATtcaaaggagaaagagagggaggtggaggaggacgaagagaaggaggaggagtaggaagaAGAGGGTCTAGATAATTGGAGAGCTGGGTGGGGCGGTTGATCTGGAAGCGGGGAGGCAGTGGAGAAGGCTTAACTGGAGGTTTCAGACCAGGAGGGTTCAGGGGGTTCTGGTCAAGATGCTCCTCCTGCCTGGACTTGGAGCCACTGGTCATCCATCGCACGGAGATGCAGATGCCCAACTGCTTCTTAAATCCTTGCACCAGCACCTTCTTGGCCATGGAAGCAGCGTAGTGAGAGGAGTAGTGGACGAGTGCACAGACCTCCTTTCCTTTGGGCCCAGCAGCCTTTATAGTGGCTCCCTCAACCCCATCTGAGAGCATCCGGAGGACCATCAGCAGCTCCCCTCGGCCCATGGAGGCGGGCAGATCGGCCAGCCACAGCTGCCTCTTCTCCGTGCTCTTCCTGACCACCAGCCGCACCCCCTCCTGCAGTTGGTAATGGTTCAGGGTCTGGATGGCAGCAGTCGCGCCCGCAGGGGTTCCGTACTTGGCGTACGCGAAGCCGCGGTTCTGCCCACTGAAGTTCATCATGAGGCGAAACTCATAGAGCGGTGCCACGCTCAGGAACAGCGGGATCAGCTGATCCTCGTACACATCCCGCGGAATCTGACTGATAAACACCTCACAGCCTGGACCGGGATGAGGACCTCTCCAGTCAGGAGGAGGACCGCCATATTTCCTCTGGCCGTTGATCTGGGTTAAAGTGATGGAGGTAGTCTTCAGCCATTCTTCCAGAGCTCTCACTCTAAGTGGGTTcagaacCTGTACAACTACTCCCTCCATTTTTGCTCCTTCACTGATTCCAGCTTCTCCTTCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96681 False 1116 lncRNA 0.56 4 6272251 6288998
TU96682 True 1713 lncRNA 0.50 5 6272251 6291512

Neighbor

gene id symbol gene type direction distance location
LOC103043333 LOC108442486,LOC108275354 coding downstream 50398 6161655 ~ 6221853 (-)
LOC103032061 LOC108436848,LOC107680293 coding downstream 235497 6012219 ~ 6036754 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding downstream 412881 5844641 ~ 5859370 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 471527 5770787 ~ 5800724 (-)
trpc3 trpc7,LOC108435597,LOC107678610 coding downstream 676226 5531871 ~ 5596025 (-)
hars hars,LOC106611772,LOC107660169 coding upstream 2172 6293684 ~ 6315841 (-)
LOC103036141 LOC108430946 coding upstream 230545 6522057 ~ 6538782 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding upstream 279304 6570816 ~ 6583742 (-)
LOC103026932 NA coding upstream 294162 6585674 ~ 6593124 (-)
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding upstream 572512 6864024 ~ 6868262 (-)
G71636 NA non-coding downstream 94231 6153891 ~ 6178020 (-)
G71612 NA non-coding downstream 185140 6086839 ~ 6087111 (-)
G71577 NA non-coding downstream 304330 5954620 ~ 5967921 (-)
G71554 NA non-coding downstream 405723 5866305 ~ 5866528 (-)
G71501 NA non-coding downstream 592141 5679805 ~ 5680110 (-)
G71646 trappc11 non-coding upstream 26717 6318229 ~ 6320682 (-)
G71659 NA non-coding upstream 58191 6349703 ~ 6350020 (-)
G71665 NA non-coding upstream 77244 6368756 ~ 6374213 (-)
G71675 LOC108430995,LOC108274926 non-coding upstream 164043 6455555 ~ 6459631 (-)
G71697 LOC108430994 non-coding upstream 202119 6493631 ~ 6498298 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 430544 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 795876 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 1348180 4924000 ~ 4924071 (-)
G71235 NA other downstream 1387763 4882170 ~ 4884488 (-)
G71175 NA other downstream 1859240 4411948 ~ 4413011 (-)
G71771 NA other upstream 485727 6777239 ~ 6824756 (-)
G71826 NA other upstream 765598 7057110 ~ 7057643 (-)
G71862 NA other upstream 1018263 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1259673 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1482383 7773895 ~ 7842280 (-)

Expression


Co-expression Network