G71646 (trappc11)


Basic Information

Item Value
gene id G71646
gene name trappc11
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6318229 ~ 6320682 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96690
CTTAGTTCTACACTTCGGGTACTCGTGGTCACCTGGCAGGACTTTAAAGGAAATGGGCACCCTGTCTGCCCTCCTGTTTGCACAGAAAGCATCCCATATGGCTCTGTGCACTGCGTTATACACCACATCCAGACCGGTCAGAGCCACGAAGGCCATTGGCCTGCAGCACAGCTCTGGGGGGAGATCCCACTGCGTCGGACTCATCTTACCAAGAACTGGCCGTTCAAGAggggaactaaaaaaaaCTTTTACTGCTGCAGTCTGTTAAATCCGTCTACATCCACTTCATTTACATTAAACCCTGATTAATATCCGTGTTTATCTCCCAGAGCAGCCGGGCCCACACCCCATGACCCTCCGCCACAGCCACCGGTGTTGTGTCGCGATGTGCTACCTCGTCGAATCGTGCTACCACAATGTGGATCCAGTTAAAGCTgctgaaataaaacagtaaatagagCGTTTTAAGCTAAATATAAGCCCTGCTA

Function

symbol description
trappc11 Acts upstream of or within several processes, including liver development; protein N-linked glycosylation; and retina development in camera-type eye. Predicted to be located in Golgi apparatus. Used to study fatty liver disease. Human ortholog(s) of this gene implicated in autosomal recessive limb-girdle muscular dystrophy type 2S. Orthologous to human TRAPPC11 (trafficking protein particle complex subunit 11).

NR:

description
PREDICTED: trafficking protein particle complex subunit 11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96690 True 488 lncRNA 0.50 2 6318229 6320682

Neighbor

gene id symbol gene type direction distance location
hars hars,LOC106611772,LOC107660169 coding downstream 2388 6293684 ~ 6315841 (-)
LOC103043333 LOC108442486,LOC108275354 coding downstream 96376 6161655 ~ 6221853 (-)
LOC103032061 LOC108436848,LOC107680293 coding downstream 281475 6012219 ~ 6036754 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding downstream 458859 5844641 ~ 5859370 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 517505 5770787 ~ 5800724 (-)
LOC103036141 LOC108430946 coding upstream 201375 6522057 ~ 6538782 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding upstream 250134 6570816 ~ 6583742 (-)
LOC103026932 NA coding upstream 264992 6585674 ~ 6593124 (-)
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding upstream 543342 6864024 ~ 6868262 (-)
LOC103025318 LOC108430942 coding upstream 628894 6949576 ~ 6956193 (-)
G71644 NA non-coding downstream 26717 6272251 ~ 6291512 (-)
G71636 NA non-coding downstream 140209 6153891 ~ 6178020 (-)
G71612 NA non-coding downstream 231118 6086839 ~ 6087111 (-)
G71577 NA non-coding downstream 350308 5954620 ~ 5967921 (-)
G71554 NA non-coding downstream 451701 5866305 ~ 5866528 (-)
G71659 NA non-coding upstream 29021 6349703 ~ 6350020 (-)
G71665 NA non-coding upstream 48074 6368756 ~ 6374213 (-)
G71675 LOC108430995,LOC108274926 non-coding upstream 134873 6455555 ~ 6459631 (-)
G71697 LOC108430994 non-coding upstream 172949 6493631 ~ 6498298 (-)
G71704 NA non-coding upstream 240442 6561124 ~ 6566115 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 476522 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 841854 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 1394158 4924000 ~ 4924071 (-)
G71235 NA other downstream 1433741 4882170 ~ 4884488 (-)
G71175 NA other downstream 1905218 4411948 ~ 4413011 (-)
G71771 NA other upstream 456557 6777239 ~ 6824756 (-)
G71826 NA other upstream 736428 7057110 ~ 7057643 (-)
G71862 NA other upstream 989093 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1230503 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1453213 7773895 ~ 7842280 (-)

Expression


Co-expression Network