G71682 (LOC108430946,LOC108416517)


Basic Information

Item Value
gene id G71682
gene name LOC108430946,LOC108416517
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6525641 ~ 6538794 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96736
CTGTTGAAGCATCTGTAGTTAGCAGGCTGCAGTTTCTCTGGTGGAGGTAGCTCTGTGTTTAAGGAGGACAGGAGCTCCTCGTTGTCTCCCAGTGCCTGTCTCCAGGGTGAGCAGTAGGATTTGGGAATTACTGTGGTGTTGAACTTCTCACGTGGAATTTCCTTCAACCTGGAGCAAGGACGCTGGGGCTGCCTTTCTTGGCCACAGTTTTCTTCAGAGTGGTAACCAGACTGTGTTTACCAGGTACGGGGTACACCAGGTTCTCCTTCCCTCCATGTAGGTGTTCGGCTGTCTGATCCTGGTTCTGGAGCTGGCTCTGAAAATGATTGTCGTATATGATAGTAGACGCGTCAGCACAGCTTTCCACTGTGTACTTCTCCACTCTCTTCTGCCTCTCCTGGAACATTCTGGAGCCTCTGTTTGACGTCAGGTTCAGCTCCTCCATCATCACATCTCTGGGCACGCTGACCTTCTTCCCCAGGTTCAGGCCCTctcctCTGACTTCTCTGCTGAGGGCCAGTgcctgctgctgccgctgtttGGCGAGGCTATTGTGTGAATTCTGCATCTTCTCTcctctgtgtgtgagtgtgtgtgctgaaggGGAAGCTGTGATGGTGCTGAAGGTCCTGCTGGATCTTGGACTGGATGGAGATGGAAAGTGCTTGTATAGACTGGCCCTGGACCCCTGGCCTGTCC

Function

NR:

description
PREDICTED: myozenin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96736 True 699 TUCP 0.53 5 6525641 6538794

Neighbor

gene id symbol gene type direction distance location
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 5170 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 16623 6472178 ~ 6509018 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding upstream 63191 6374549 ~ 6462450 (+)
LOC103029834 LOC108430996 coding upstream 153278 6353639 ~ 6372363 (+)
trappc11 trappc11,LOC107587085,LOC107731725,LOC107758539,LOC107559294 coding upstream 180943 6318320 ~ 6344698 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding downstream 2622 6541416 ~ 6559735 (+)
LOC103026234 NA coding downstream 66510 6605304 ~ 6633875 (+)
LOC103042411 LOC108430989 coding downstream 139802 6678596 ~ 6719028 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 394596 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 600242 7139036 ~ 7173548 (+)
G71628 NA non-coding upstream 179926 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 368223 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 438654 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 488982 6032185 ~ 6036659 (+)
G71567 NA non-coding upstream 507538 5966554 ~ 6018103 (+)
LOC111193077 NA non-coding downstream 100872 6639666 ~ 6662003 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 328254 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 333354 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 514229 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 518940 7057734 ~ 7058275 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 568622 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 846767 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1020003 5499908 ~ 5505638 (+)
G71247 NA other upstream 1545630 4956298 ~ 4980011 (+)
G71249 NA other upstream 1557734 4963702 ~ 4967907 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 342793 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2330334 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2604105 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3429712 9968506 ~ 9970042 (+)
G72621 NA other downstream 3539785 10078579 ~ 10082140 (+)

Expression


Co-expression Network