G71697 (LOC108430994)


Basic Information

Item Value
gene id G71697
gene name LOC108430994
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6493631 ~ 6498298 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96758
acttttatggagatgttgatttcattttccagcaggacttggcacactgccaaaagtatcaattgatcttatgtaatattctaattctcTGAGACActggtttttgggttttcattgtctgtgagccataatcatcaacaaaaacattttcattacatttctgaaataaagaaaacaacttttcaatgatattcaaattgtTTAATATGTacctgtatttattaattaactttatttaagattttttgcattttgcagtgTAGTGTACAAGGGCAGCAGAAGGGATGCATGCTAGGCCCATAAGCAAGGCAGTCTTGACTCCTGGGTTCACCTAGCTGCCTGTATAATGGATTGATCATACTTCTGACTTTAACATAAAGGTTTTGTGTTGATCCTCCTCTCACCTCTGCCTCCTTCATGCTGATGATCTTCACTCCACACTCCTGGCCTCGAGCCACCAGCGCTGCATCAATCTCCTCCATTACGATCAGCATCCGCAATGAGTGAGCCTTTCCTGATACGCCATCCAGCAGTAGACCGGCCTTCACCGCCACATCACACACCACCGTGGAGATaccagTCTTCTCCATGATGTAGTCGATGGCCTCAGCGCCCAGCGTGTCGTACAGAGGAACGGCTACCAGCGAGTACGTGTAGCAGGCCAGCTCTGTAATGGTCCACTCTGGTCTGTTCTGAGCAAAGATGCCGATGTACTGGTCAGTGTTTTTTGAGTGGCCACTGTGCAGCAGTGCTGAACCCAGGTTTGCTGCTCTTTCTGCAACCTCTGAGTAGGACAGCCACTCATAAGGCTTCTTTGGCTTTCTTGCCCCTAAGCATCGTCCATTATTGGACACCCTCATGCCTCTGGTGAAGCACTCGTACATGGTTGTAGCATCATCATAGTAAAAAGACAAAAGTGCTCCGTCCTCCATTAGTGCAGACATCCGGGCAAACTCCTCCCCCGGCACAGGCAGAGACTGCATGTGCAGGTCACACGGCGGTTTCAGGGCTTTGGGCCGCGTGGCGTACAGGTACGTAGTGACCGCCGCGAAGGCCCCCACTCCCACCAGGGTCCGGGTGGACAGGCTGCGGACATACTGCCGAACCTCGTCCAGCTCAGGCAGACGCAGCTGCTTCAACAGCTCCTGAGCCTGCATGTCTGTGTTCTAGTGGATctgtggagaaagagagagagagagagtgcaacaAGGTTCAAGATTAG

Function

NR:

description
PREDICTED: long-chain-fatty-acid--CoA ligase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96758 True 1222 lncRNA 0.49 6 6493631 6498298

Neighbor

gene id symbol gene type direction distance location
hars hars,LOC106611772,LOC107660169 coding downstream 177790 6293684 ~ 6315841 (-)
LOC103043333 LOC108442486,LOC108275354 coding downstream 271778 6161655 ~ 6221853 (-)
LOC103032061 LOC108436848,LOC107680293 coding downstream 456877 6012219 ~ 6036754 (-)
LOC103035351 ube2d2,UBE2D2,ube2d1,ube2d2l,LOC106611705,LOC105010898,LOC100695155 coding downstream 634261 5844641 ~ 5859370 (-)
LOC103036182 cxxc5b,LOC103036182,LOC108444528,LOC107758529,LOC108274782,LOC107589097 coding downstream 692907 5770787 ~ 5800724 (-)
LOC103036141 LOC108430946 coding upstream 23759 6522057 ~ 6538782 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding upstream 72518 6570816 ~ 6583742 (-)
LOC103026932 NA coding upstream 87376 6585674 ~ 6593124 (-)
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding upstream 365726 6864024 ~ 6868262 (-)
LOC103025318 LOC108430942 coding upstream 451278 6949576 ~ 6956193 (-)
G71675 LOC108430995,LOC108274926 non-coding downstream 34000 6455555 ~ 6459631 (-)
G71665 NA non-coding downstream 119418 6368756 ~ 6374213 (-)
G71659 NA non-coding downstream 143611 6349703 ~ 6350020 (-)
G71646 trappc11 non-coding downstream 172949 6318229 ~ 6320682 (-)
G71644 NA non-coding downstream 202119 6272251 ~ 6291512 (-)
G71704 NA non-coding upstream 62826 6561124 ~ 6566115 (-)
G71708 NA non-coding upstream 106973 6605271 ~ 6612945 (-)
G71712 NA non-coding upstream 128769 6627067 ~ 6633649 (-)
G71755 NA non-coding upstream 215843 6714141 ~ 6732589 (-)
G71766 NA non-coding upstream 257134 6755432 ~ 6863292 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 651924 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 1017256 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 1569560 4924000 ~ 4924071 (-)
G71235 NA other downstream 1609143 4882170 ~ 4884488 (-)
G71175 NA other downstream 2080620 4411948 ~ 4413011 (-)
G71771 NA other upstream 278941 6777239 ~ 6824756 (-)
G71826 NA other upstream 558812 7057110 ~ 7057643 (-)
G71862 NA other upstream 811477 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 1052887 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 1275597 7773895 ~ 7842280 (-)

Expression


Co-expression Network