LOC111193077


Basic Information

Item Value
gene id LOC111193077
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6639666 ~ 6662003 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96785
cacactcatgggAGCCATCACCGTgtggcggtgtgtgtgtgtgtctaaggcTGGAGGGTGTGGGTGCACTTGTCATGTCTGTGAAATTATGAATGAGTGAGAGAGCGTgtgagagtcagagagagagagagcgagagagagagagagggagggatggagagaggaaAAGACGTGTCTGCTGATACGTAGAAAGAATTGCCAACCGGCAGCACAGCCCCTCTGACAAAGGTGTAGGAAGAGAAGGCTGACAGACAGGAGCTCAGAGTGAGAGTGATAAAGCTCCCCACAGCCGCCCTGCACCACACCGCACCAACGCCAACATGGAGCAGAAGacaacCACGACTCAGAAGCACATGGTGAAAAGCAGGTCCAAGTCTACTGAAGAAATCCAGCAAGCTAAGAAGGCCTTCCACATTCCCCAGAAGTCTCTTCCTGGAGGATCAGAGTTAGAAAAAGTGAAGGAAAGCCCTGAAGAATCTGAAACTCCTGCGTCGTCATCAGAGGAGCTGAAGTAACCCTTATAATTCACAACCTGGAGCCACTACATATCATACACTCATTCACACCACACAATATCCACCATGAATTCCCCAGAAACCTCACTCCAGAACATCACAACATGCTGTTACTTCACTCTTCAAGCTGgttaagctggttgaccagcctGGCTCTTGACTTGTAGGAAACTCAATAACTCCATTATGACCAAGCTGATTGACCTCCATGATCCTCATGcccaagctggtcaaccagtatGGTGATGCTAGTTGACGAGCTTGCCCAATAGCCCAATCAGTGTGACCATGCTAGTCAACCAGGACACAAACCTGGCTTAACACTACGTTATATGCTTTTGCCTGGATGCCCAACCAGCTTTTTAACCACCTCaaccatctaaaaccagctaccaCCAGAAGCTGGGCTTAAACTGGGTTTGTCCGCAGGGATTTCCTACAGAGGCAGGTCAGATGCACACGTCTCCATGCTGTGCTGTCATATCAACTGAATGTGTTTGTgcaataaaaagcagtttttggTGAGTGTGTGTCCACATGAAAGTAACATATTCTGTAATATGTTGTCAATATCAGGGCTCAGAGATGGAATAAAGAATTGATTCACTCCAA
>TU96786
TGCTCTCGCGCTGTTATTGGGGAACTGTGGTGTTTAGTGGAACAATAGGGTGGCTTGGTGAATTTATAATTGGCTGGGTGTGTATAAATGAGCAGCAGTCGCTCCCTTGTGTTGCCATGGTGACCCAGGCTCTACATGGTTGTCTTGCTGGTATTGGTACCCACTGGCATTCAGATCAGGAGatcaagcaaacacacacacatagatttGTGTGTAGAAGGCTGACAGACAGGAGCTCAGAGTGAGAGTGATAAAGCTCCCCACAGCCGCCCTGCACCACACCGCACCAACGCCAACATGGAGCAGAAGacaacCACGACTCAGAAGCACATGGTGAAAAGCAGGTCCAAGTCTACTGAAGAAATCCAGCAAGCTAAGAAGGCCTTCCACATTCCCCAGAAGTCTCTTCCTGGAGGATCAGAGTTAGAAAAAGTGAAGGAAAGCCCTGAAGAATCTGAAACTCCTGCGTCGTCATCAGAGGAGCTGAAGTAACCCTTATAATTCACAACCTGGAGCCACTACATATCATACACTCATTCACACCACACAATATCCACCATGAATTCCCCAGAAACCTCACTCCAGAACATCACAACATGCTGTTACTTCACTCTTCAAGCTGgttaagctggttgaccagcctGGCTCTTGACTTGTAGGAAACTCAATAACTCCATTATGACCAAGCTGATTGACCTCCATGATCCTCATGcccaagctggtcaaccagtatGGTGATGCTAGTTGACGAGCTTGCCCAATAGCCCAATCAGTGTGACCATGCTAGTCAACCAGGACACAAACCTGGCTTAACACTACGTTATATGCTTTTGCCTGGATGCCCAACCAGCTTTTTAACCACCTCaaccatctaaaaccagctaccaCCAGAAGCTGGGCTTAAACTGGGTTTGTCCGCAGGGATTTCCTACAGAGGCAGGTCAGATGCACACGTCTCCATGCTGTGCTGTCATATCAACTGAATGTGTTTGTgcaataaaaagcagtttttggTGAGTGTGTGTCCACATGAAAGTAACATATTCTGTAATATGTTGTCAATATCAGGGCTCAGAGATGGAATAAAGAATTGATTCACTCCAA
>XR_002650233.1
TGACCCAGGCTCTACATGGTTGTCTTGCTGGTATTGGTACCCACTGGCATTCAGATCAGGAGatcaagcaaacacacacacatagatttGTGTGTAGAAGGCTGACAGACAGGAGCTCAGAGTGAGAGTGATAAAGCTCCCCACAGCCGCCCTGCACCACACCGCACCAACGCCAACATGGAGCAGAAGacaacCACGACTCAGAAGCACATGGTGAAAAGCAGGTCCAAGTCTACTGAAGAAATCCAGCAAGCTAAGAAGGCCTTCCACATTCCCCAGAAGTCTCTTCCTGGAGGATCAGAGTTAGAAAAAGTGAAGGAAAGCCCTGAAGAATCTGAAACTCCTGCGTCGTCATCAGAGGAGCTGAAGTAACCCTTATAATTCACAACCTGGAGCCACTACATATCATACACTCATTCACACCACACAATATCCACCATGAATTCCCCAGAAACCTCACTCCAGAACATCACAACATGCTGTTACTTCACTCTTCAAGCTGgttaagctggttgaccagcctGGCTCTTGACTTGTAGGAAACTCAATAACTCCATTATGACCAAGCTGATTGACCTCCATGATCCTCATGcccaagctggtcaaccagtatGGTGATGCTAGTTGACGAGCTTGCCCAATAGCCCAATCAGTGTGACCATGCTAGTCAACCAGGACACAAACCTGGCTTAACACTACGTTATATGCTTTTGCCTGGATGCCCAACCAGCTTTTTAACCACCTCaaccatctaaaaccagctaccaCCAGAAGCTGGGCTTAAACTGGGTTTGTCCGCAGGGATTTCCTACAGAGGCAGGTCAGATGCACACGTCTCCATGCTGTGCTGTCATATCAACTGAATGTGTTTGTgcaataaaaagcagtttttggTGAGTGTGTGTCCACATGAAAGTAACATATTCTGTAATATGTTGTCAATATCAGGGCTCAGAGATGGAATAAAGAATTGATTCACTCCAAGCAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96785 True 1127 lncRNA 0.48 6 6639666 6661997
TU96786 False 1104 lncRNA 0.47 5 6656560 6661997
XR_002650233.1 False 990 lncRNA 0.47 5 6656680 6662003

Neighbor

gene id symbol gene type direction distance location
LOC103026234 NA coding upstream 5791 6605304 ~ 6633875 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 79931 6541416 ~ 6559735 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 119195 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 130648 6472178 ~ 6509018 (+)
LOC103028894 stox2b,LOC108430995,LOC108274926,LOC107680916,LOC107758540 coding upstream 177216 6374549 ~ 6462450 (+)
LOC103042411 LOC108430989 coding downstream 16593 6678596 ~ 6719028 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 271387 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 477033 7139036 ~ 7173548 (+)
LOC103023202 NA coding downstream 544474 7206477 ~ 7212496 (+)
LOC103027052 LOC108430977 coding downstream 950709 7612712 ~ 7652490 (+)
G71628 NA non-coding upstream 293951 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 482248 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 552679 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 603007 6032185 ~ 6036659 (+)
G71567 NA non-coding upstream 621563 5966554 ~ 6018103 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding downstream 205045 6867048 ~ 6868404 (+)
G71787 NA non-coding downstream 210145 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 391020 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 395731 7057734 ~ 7058275 (+)
G71805 NA non-coding downstream 399689 7061692 ~ 7100725 (+)
G71682 LOC108430946,LOC108416517 other upstream 100872 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 682647 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 960792 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1134028 5499908 ~ 5505638 (+)
G71247 NA other upstream 1659655 4956298 ~ 4980011 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 219584 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2207125 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2480896 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3306503 9968506 ~ 9970042 (+)
G72621 NA other downstream 3416576 10078579 ~ 10082140 (+)

Expression


Co-expression Network