G71747 (adra2da,LOC108430987,LOC105904584)


Basic Information

Item Value
gene id G71747
gene name adra2da,LOC108430987,LOC105904584
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6867048 ~ 6868404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96826
CGGCCGCCGCTATGGTGCCGTTCTGCGCCGCGCACACGGTGGCCGAGCGCTGCTTGGCCACGCGGTAGATCTTGCAGTAGACGGTGACCATGATGAAGCCGGGCGCGAAGAAGGACACGAGCGCGGAGGAGAGGATGTACCACGGCTCCTCGTTCAGCAGGCACTCTCCCTCGCCGTGGCGCGTGAGCACGATGGGCGGGAAGGAGATGACAGCCGACACCAGCCACACGACGGCGATGGCGCAGCGCACGCGCCTCGGCGTGCGCTTTAGGTTGTAGCGCACGGCGCGCGTCACCGACCAGTAGCGGTCAAGGCTGATGGCGCACAGGTGCACGATGGACGAGGTGCAGAAGAGCACGTCCAGCGCCAGGTAGAGCGAGCACCACACGCTGCCGAAGTACCAGTAGCCCATCACCTCGTTGGCGAGCGAGAACGGGATCACAAGCGCGGCCACGAGCACGTCCGCGCACGCCAGGGACACGAGAAAGAGGTTCTGGGGGGCGCGAAGGGCACGGCTCGTCAGCACGGCCACGATCACCAGCGCGTTCCCGACGATGGTCAGGAGGATGAGGAGCGACACAACGAGGATGATGAAGGCTGCGGACACGTCCGCGTGCGGCCACGGCCGCGCGGTTGTGTTGGAGAAGGACAAGCCCTCCGTGAGCCCCCCATGGCCACTACTGTCGGGGCTGCTGGTAGTGCTAGCGGTGGTGGAGTCATGCGTGGATGCATTGGAGTGCGTCAAGTCCATGATGCGCGCATCGTCTCCAGTGgatataaatagatagatagagagataggtAAGTGAGTAGTCTGGATGGTGAACCACTCGAGCTCTCCGGCGCGCGCGGACAAACCCAAGGCGCGAGCACACGGTTCACACTCTAGTCAGGATTAATGATGGTCGACATAGTGGTGGTCCAAGAAATAATCCACGAtggaaaaaacatataaaagagataaaagaggGACTGAGCTTCATCCGAGCGCGGGAATGTcgcttttttcctttctttgatCCTGCACGCTTTTATCTTCCCTCTCTTGCACGCGCGCTGTCTGTCAGCCTGTCCGTCACTCCAGTGTCGCGCGCCTCGCCAAACTCGCGCTGCTCTCCGGATGAAATGTTGGAATGTGCGCTTGAGAGATAGCGGGGTGGTGACGTCACGCAGGACAGcccacttccacacacacacatacacacacaaacacacacacacacacacacacacacacacagccacacgcAGGCGGGTGGGCGCGcgcacacacaggcacaaacgTAGACGcgcacatactgtatgtatacacacccacacacatggCTCACtcgtcacaaaaaaaaacatagacgCGC

Function

symbol description
adra2da Enables alpha2-adrenergic receptor activity. Involved in adenylate cyclase-inhibiting adrenergic receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain; cerebellum; musculature system; optic tectum; and ovary.

NR:

description
PREDICTED: alpha-2Da adrenergic receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96826 True 1357 lncRNA 0.60 1 6867048 6868404

Neighbor

gene id symbol gene type direction distance location
LOC103042411 LOC108430989 coding upstream 148020 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 233173 6605304 ~ 6633875 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 307313 6541416 ~ 6559735 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 346577 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 358030 6472178 ~ 6509018 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 64986 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 270632 7139036 ~ 7173548 (+)
LOC103023202 NA coding downstream 338073 7206477 ~ 7212496 (+)
LOC103027052 LOC108430977 coding downstream 744308 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 803154 7671558 ~ 7674663 (+)
LOC111193077 NA non-coding upstream 205045 6639666 ~ 6662003 (+)
G71628 NA non-coding upstream 521333 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 709630 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 780061 6086574 ~ 6086987 (+)
G71608 brd8,LOC107758534 non-coding upstream 830389 6032185 ~ 6036659 (+)
G71787 NA non-coding downstream 3744 6872148 ~ 6872364 (+)
G71808 NA non-coding downstream 184619 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 189330 7057734 ~ 7058275 (+)
G71805 NA non-coding downstream 193288 7061692 ~ 7100725 (+)
G71858 NA non-coding downstream 437755 7306159 ~ 7306542 (+)
G71682 LOC108430946,LOC108416517 other upstream 328254 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 910029 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1188174 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1361410 5499908 ~ 5505638 (+)
G71249 NA other upstream 1899141 4963702 ~ 4967907 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 13183 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 2000724 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2274495 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3100102 9968506 ~ 9970042 (+)
G72621 NA other downstream 3210175 10078579 ~ 10082140 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_019047 adra2db coding NC_007132.7 CM002905.2 32820175 ~ 32821422 (+)
grasscarp (Ctenopharyngodon idella) CI01000169_01038714_01039940 ADRA2DA coding CI01000169 null 1038660 ~ 1040417 (-)