G71787


Basic Information

Item Value
gene id G71787
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6872148 ~ 6872364 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96876
aagccattatgtggcgggccacaaaaaagaaaaaatctgttTCGGAAAATGAGGTGTAATGGGATGGATACTACAGACTAGTtcctctccagcccagagggttgttgaacccaattgcagaacagttcatatcaaagcaggtaaacccaagaagaaaggaaaaaaaaaaacacactgctcctcacacGGGATTAAACCCATATCGCCAGGGTCGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96876 True 217 lncRNA 0.44 1 6872148 6872364

Neighbor

gene id symbol gene type direction distance location
LOC103042411 LOC108430989 coding upstream 153120 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 238273 6605304 ~ 6633875 (+)
LOC103027224 LOC103027224,LOC108430945,LOC108274535,LOC107715168,LOC107678618,LOC103354395 coding upstream 312413 6541416 ~ 6559735 (+)
LOC103042719 rbm22,LOC108430993,LOC102796909,LOC107758467 coding upstream 351677 6509961 ~ 6520471 (+)
LOC103043030 LOC108430994,LOC108274927 coding upstream 363130 6472178 ~ 6509018 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding downstream 61026 6933390 ~ 6940362 (+)
LOC103023840 cpeb4,LOC108430986 coding downstream 266672 7139036 ~ 7173548 (+)
LOC103023202 NA coding downstream 334113 7206477 ~ 7212496 (+)
LOC103027052 LOC108430977 coding downstream 740348 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 799194 7671558 ~ 7674663 (+)
G71747 adra2da,LOC108430987,LOC105904584 non-coding upstream 3744 6867048 ~ 6868404 (+)
LOC111193077 NA non-coding upstream 210145 6639666 ~ 6662003 (+)
G71628 NA non-coding upstream 526433 6345234 ~ 6345715 (+)
G71613 NA non-coding upstream 714730 6153881 ~ 6157418 (+)
G71611 NA non-coding upstream 785161 6086574 ~ 6086987 (+)
G71808 NA non-coding downstream 180659 7053023 ~ 7053324 (+)
G71810 NA non-coding downstream 185370 7057734 ~ 7058275 (+)
G71805 NA non-coding downstream 189328 7061692 ~ 7100725 (+)
G71858 NA non-coding downstream 433795 7306159 ~ 7306542 (+)
G71859 NA non-coding downstream 437418 7309782 ~ 7311864 (+)
G71682 LOC108430946,LOC108416517 other upstream 333354 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 915129 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1193274 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1366510 5499908 ~ 5505638 (+)
G71249 NA other upstream 1904241 4963702 ~ 4967907 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other downstream 9223 6881587 ~ 6885541 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1996764 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 2270535 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 3096142 9968506 ~ 9970042 (+)
G72621 NA other downstream 3206215 10078579 ~ 10082140 (+)

Expression


Co-expression Network