G71790 (LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102200059)


Basic Information

Item Value
gene id G71790
gene name LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102200059
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 6881532 ~ 6885591 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96879
ACGGATCTGCCCTCTTCATCCAAAGCCACCTAGTAGCCTTTTCGGCGGCTTCGCTTGCGGACTTGATGGCCCTCTTCTTTGCTGCTCCCACGATGCCCAGGCGGCTGAGGACCTTGCACAGAGACCTCCCTGCAAATCCCCTGCAGCCTACTTCTATGGGCTCGTAGAACGTCTTCCAGCCTCCTCCCCTGCACTCCTCCACAAGTTCCTGGTATTTAGCCCTCTTCCTCTCATTTGCTTCCTCGATGTTTTCTTCCCAGGGCACTGTCAACTCCAGTATGATCAGCTGTTTTGAAGACTGAGAGGTCATGATCATATCTGGACGGAGGGTTGTTGTTGCGATCTGCTGGGGGAACCTCATTTGCTTACCCAGGTCGACCTGCAGCTGCCAGTCAgatgctg

Function

NR:

description
PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105418110

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96879 True 402 lncRNA 0.55 2 6881532 6885591

Neighbor

gene id symbol gene type direction distance location
LOC103025929 adra2da,LOC108430987,LOC105904584,LOC107667592,LOC107757419 coding downstream 13270 6864024 ~ 6868262 (-)
LOC103026932 NA coding downstream 288408 6585674 ~ 6593124 (-)
LOC103027842 LOC108430992,LOC104947123,LOC107094991,LOC106517448,LOC103354384,LOC106905160,LOC108240514 coding downstream 297790 6570816 ~ 6583742 (-)
LOC103036141 LOC108430946 coding downstream 342750 6522057 ~ 6538782 (-)
hars hars,LOC106611772,LOC107660169 coding downstream 565691 6293684 ~ 6315841 (-)
LOC103025318 LOC108430942 coding upstream 63985 6949576 ~ 6956193 (-)
LOC103024994 stc2a,stc2,LOC108430941,LOC108274458,LOC107677705 coding upstream 99627 6985218 ~ 7006934 (-)
LOC103022894 drd1a,LOC108430983,LOC108274482,LOC107553333,LOC107677717,LOC107598377 coding upstream 375390 7260981 ~ 7265921 (-)
kif3a kif3a coding upstream 539092 7424683 ~ 7444873 (-)
LOC103030823 LOC108430979 coding upstream 560987 7446578 ~ 7486638 (-)
G71766 NA non-coding downstream 18240 6755432 ~ 6863292 (-)
G71755 NA non-coding downstream 148943 6714141 ~ 6732589 (-)
G71712 NA non-coding downstream 247883 6627067 ~ 6633649 (-)
G71708 NA non-coding downstream 268587 6605271 ~ 6612945 (-)
G71704 NA non-coding downstream 315417 6561124 ~ 6566115 (-)
G71793 NA non-coding upstream 25823 6911414 ~ 6911709 (-)
G71817 NA non-coding upstream 50207 6935798 ~ 6936080 (-)
G71822 NA non-coding upstream 97212 6982803 ~ 6983003 (-)
G71825 NA non-coding upstream 167307 7052898 ~ 7053319 (-)
G71839 NA non-coding upstream 245160 7130751 ~ 7175962 (-)
G71771 NA other downstream 56776 6777239 ~ 6824756 (-)
LOC103035656 LOC103035656,LOC108414340,LOC108274783 other downstream 1039825 5829621 ~ 5841707 (-)
G71458 atp7a,LOC107554685,LOC107684827,LOC107745084,LOC107559604 other downstream 1405157 5471666 ~ 5476375 (-)
trnaw-cca_42 NA other downstream 1957461 4924000 ~ 4924071 (-)
G71235 NA other downstream 1997044 4882170 ~ 4884488 (-)
G71826 NA other upstream 171519 7057110 ~ 7057643 (-)
G71862 NA other upstream 424184 7309775 ~ 7312926 (-)
LOC103027657 LOC108430978 other upstream 665594 7551185 ~ 7590554 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other upstream 888304 7773895 ~ 7842280 (-)
G72336 NA other upstream 1753947 8639538 ~ 8645601 (-)

Expression


Co-expression Network