G71859


Basic Information

Item Value
gene id G71859
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7309782 ~ 7311864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU96964
ATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATATGGGTTTAGTAATCAGCATATATAGAAATATGGGTTTAGTAATCAGCATGTATAGAATAGGGGTTTAGTCATCAGCATGTATAGAAATGGGGGTTTAATCATCAGCATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCAACAGCATGTATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGCTTTTTGCATGTCCTTAACCAGTGCTGAAGATTTTCAAAGTAAGGAACCACAGTTGTTCTTTTCCGTAAACGCCGGTAGGCTTTCCTCAAGCAGTTCTTCTCCCCCTCCT
>TU96965
AGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGCATAGAAATAGGGGTTTAGTCATCAGCATGCATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCAACAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAGTAGGGGTTTAGTCATCAGCATGCATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATGGAAATAGGGGTTTCGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGCATAGAAATAGGGGTTTAGTCATCAGCATGTACAGAAATAGGGGTTTAGTCAACAGCATGTATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGCTTTTTGCATGTCCTTAACCAGTGCTGAAGATTTTCAAAGTAAGGAACCACAGTTGTTCTTTTCCGTAAACGCCGGTAGGCTTTCCTCAAGCAGTTCTTCTCCCCCTCCT
>TU96967
ATAAATTCCGTTTATTGTATCATTTTTCACATTATGAACACTTACACATGtactaaatacattttactttgATGACTATGGGTTTGGTCATCAGCATGTAATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATGGGGGTTTAATCATCAGCATGTATAGAAATATGGGTTTAGTAATCAGCATATATAGAAATATGGGTTTAGTAATCAGCATGTATAGAATAGGGGTTTAGTCATCAGCATGTATAGAAATGGGGGTTTAATCATCAGCATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATGGAAATAGGGGTTTCGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGCATAGAAATAGGGGTTTAGTCATCAGCATGTACAGAAATAGGGGTTTAGTCAACAGCATGTATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGCTTTTTGCATGTCCTTAACCAGTGCTGAAGATTTTCAAAGTAAGGAACCACAGTTGTTCTTTTCCGTAAACGCCGGTAGGCTTTCCTCAAGCAGTTCTTCTCCCCCTCCT
>TU96968
ATAAATTCCGTTTATTGTATCATTTTTCACATTATGAACACTTACACATGtactaaatacattttactttgATGACTATGGGTTTGGTCATCAGCATGTAATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATGGGGGTTTAATCATCAGCATGTATAGAAATATGGGTTTAGTAATCAGCATATATAGAAATATGGGTTTAGTAATCAGCATGTATAGAAGTAGGGGGTTAGTAATCAGCATGTATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGCTTTTTGCATGTCCTTAACCAGTGCTGAAGATTTTCAAAGTAAGGAACCACAGTTGTTCTTTTCCGTAAACGCCGGTAGGCTTTCCTCAAGCAGTTCTTCTCCCCCTCCT
>TU96970
ATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATATGGGTTTAGTAATCAGCATATATAGAAATATGGGTTTAGTAATCAGCATGTATAGAATAGGGGTTTAGTCATCAGCATGTATAGAAATGGGGGTTTAATCATCAGCATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAGTAGGGGTTTAGTCATCAGCATGCATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATGGAAATAGGGGTTTCGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGCATAGAAATAGGGGTTTAGTCATCAGCATGTACAGAAATAGGGGTTTAGTCAACAGCATGTATAGAAGTAGGGGTTGATCTTAGCATTTATAGAAATATGGGTTTGGTCATCAGAATGTATAGAAATATGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGGGTTTAGTCATCAGCATGTATAGAAATAGGCTTTTTGCATGTCCTTAACCAGTGCTGAAGATTTTCAAAGTAAGGAACCACAGTTGTTCTTTTCCGTAAACGCCGGTAGGCTTTCCTCAAGCAGTTCTTCTCCCCCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU96964 False 482 lncRNA 0.37 2 7310032 7311864
TU96965 True 784 lncRNA 0.38 2 7310603 7311864
TU96967 False 756 lncRNA 0.36 3 7309782 7311864
TU96968 False 519 lncRNA 0.35 4 7309782 7311864
TU96970 False 690 lncRNA 0.37 2 7310032 7311864

Neighbor

gene id symbol gene type direction distance location
LOC103023202 NA coding upstream 97286 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 136234 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 369420 6933390 ~ 6940362 (+)
LOC103042411 LOC108430989 coding upstream 590754 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 675907 6605304 ~ 6633875 (+)
LOC103027052 LOC108430977 coding downstream 300848 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 359694 7671558 ~ 7674663 (+)
mars2 mars2 coding downstream 408016 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 1128273 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 1362985 8674849 ~ 8687469 (+)
G71858 NA non-coding upstream 3240 7306159 ~ 7306542 (+)
G71805 NA non-coding upstream 209057 7061692 ~ 7100725 (+)
G71810 NA non-coding upstream 251507 7057734 ~ 7058275 (+)
G71808 NA non-coding upstream 256458 7053023 ~ 7053324 (+)
G71787 NA non-coding upstream 437418 6872148 ~ 6872364 (+)
G71878 kif3a,LOC107598362 non-coding downstream 112840 7424704 ~ 7441750 (+)
G71891 NA non-coding downstream 160997 7472861 ~ 7473404 (+)
G71892 NA non-coding downstream 165602 7477466 ~ 7477724 (+)
G71894 NA non-coding downstream 171799 7483663 ~ 7484151 (+)
G71895 NA non-coding downstream 174306 7486170 ~ 7486410 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 424241 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 770988 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1352763 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1630908 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1804144 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1557264 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1831035 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2656642 9968506 ~ 9970042 (+)
G72621 NA other downstream 2766715 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2961055 10272919 ~ 10626964 (+)

Expression


Co-expression Network