G71878 (kif3a,LOC107598362)


Basic Information

Item Value
gene id G71878
gene name kif3a,LOC107598362
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7424704 ~ 7441750 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97006
taaattaagaagTATACAGAGTACAGCACAGTAAATGTAAacattataatgtaaaataaaggtcACATTGTTCGAGTGCAGTGTGCATGTGATAGctcataaaactaaaacaaaatacagttaGTCAGTGTGAAATGGCAATACAAGCGTAGGGGGGTAAACAGCATGCAGGTTCTCCAACCCCTCCCCCCTCCAAATCCTACAAAATGAGGTTAGCTGCACACGATAAATACACAAAGTAAAAGACTACAGTGTAACTGCAAACTGCCAAATAGTACAAGCATCAAGCATGTGATTCATATCTAAAGCAGCTTGCTCAAGACGACAGGCTAATCAGTTAGAGCATCTGAATCGTAATATCCTGCTCCTGAGGCTTTCAGGTGTCCTGCACtgcactgaactgaactgaacagacAGCGACACAAAACCCAACACTCTAGTAACAGCTCCAGCTCTGTGGAATAAATTGAGTCTTTAGCTCAATGCATTTACTGAAATGAATCAGTGAGTCAGGGCTTTTAGATCAGCAGTTAAGAAGCAGGTAACATCATTACTCCTCTATATGTACACTAGATTGATTTGCTCATTTCTTCAACAacaatttaaatgtgtttagtcAGTTTGCTTACATCTTTACACAATTCACGTCAAATAATTCTTAAACCTCATGAAAGGACCAGCCTGGACTGCAGTCAGAGACGGAGATGAAGCTCACTGCAGGAGGGAGTCGATCACTGTATCTGGCCTAGATGAGCgtttcCTGCGGCTAGTCTTGGGCCTTGACTTGCCACCTTTTGAAGTCCTGGGCCTCTCCAGCTTCATCAAAGACTGCCGCATGCTCTCCTCCGTATACGCAAGATACACGTGAGAGAGGTCCACTTCAAACGGATCCTTTTCCTTCTTGTCTGGCACTGGGGTTTGTTTTCTCATGTTGTTGCCAGTATAGGCCAcacatttCAGTTGCCATTCACCAATATCTTCATTCCAGTGTACATAATTTTCAATCATTTCCTGGTATTCCTGAGGGATGAAATTGTCGATGATGAGCATCTGCAGGCGGAGTTCTCGGCTGAGTTGGCGGATGTTCTCCAGTAGCCCCTCAATTTCCCTGTGATGCTCCTGCTGCAGGTCTGCCCTCTGACTTTGCAGCCATCAGCATGGTCCAGACTTTCTTTAATTTCTTGGTCTTGCCCTGGGCCTCCTCCTGCAAACTGGTGTATTTCTCCTCAATGTCCAAGCGCTCTTGCTCCTTCTCTTCCAGTTCTTTGCGCAGCTGCTCAGCTCTTTTCCGTCGTTCCTCCAGTTCATTGTTGGACTCCTCCAAAAGCTTTTCCTGCTCTTCAGCCTTGGCCAGCAAGTCAACACCTCCTACAATAACCTTCTTCTCCAGAGCAGAGAGCTTCTCTAGCAATAAGTGATGTTCTTGTTGTGCTTTCAGTaggtctttttctcttttctccagCTCTGCTCGTGCTTtgttcctctcctcctcctccatgtcCAGCTTGGCCTCCAGGGCCTTGCGTTCTTCTTCGATCTTTGCCTGCATCTCCACCATCTTGTCTGGAGACATCTTCTTCTTTCCTCGTCGATTCCGGGGTCTCTCTCCACCGATTCCGGCCTCGTCCTCTCCTTCATCCATCTCTTCAGAGCCGCTGCCCTCTGAACCGGAGATTTCTCCTTCTTCCAGTTTTCTCTTGAGTTCTTCGATTTCTTTCTGAAACTGGCGCAACAGTGCATCTTTGGGGTCCTCATTAATTCTGGCCTTATTCTTGATGTTCTTCGCTCGGTTAGCATAGCGCAAGGTGCTGATGGTCTCATCGTAGTTGTAGTCAGCTGGACCAATGTTTGCACaCATCATGGTTTTAGAGTTTCCTCCCAGAGAGTCCTGCAGAAGGCGGGTGAGTTTGGAGTTCCTGTAGGGCACGTGTGTGCTCTTTCCATCCACTAGAGCAGAGATGACATTGCCCAGGGTGGACAGGGACAGGTTGATCTTAGTTGCTTCTTTAAGACGTTGTCCAGTGGCACCCGTTTTCCCCTGCCTCTCTGAACCCGCAAGGTCCACCAAGTGTAGTTTACCCATTCGCACATGCTGGTTTCCATCAATGCCCTTCTCACTGCACTCAATGGTGATGGTGAAGATGGCGTGAGAGCGGGAGCTGTGCTCGTTCATATTGGTAGCACCCACAGAACGGTTCTTATGGCCGAGAGTCATAATTCTATCCATGTCATCTGCATTGTTCACAACATATCCAGAAAGGTCTTTAATGTAGACTCCCACATCTGGCCTCTCTTTTACCTCCAATCTCTGCATCTGGTCCTTCCCCAGCAGGTCCCTCACTTCCTCATTGTAGATTTCCAAGTATGAAACTCTAACTAAAAACCTTGTGTCTCCCTCTGCTTTAGCGATGTGGCCAAAGATGTGAGCAAATGAATTTGGTATGATCCCTCTGAGCTCAGGCACGGCTCTCACTCCCTCCATGGTGAAGGTTTTTCCAGTGCCTGTTTGACCATAGGCGAATATTGTTCCGTTATACCCCTCCAATACTGAATCAACAATGGGTCGGGCTGTTAAATTGTAGACATCCAGCTGTTTGCTGTCGGGACTGAATACTGTGTCGAATGTGAAGGTCTTTGGCGGCTCGTGGGGCGTCTCAGTCTTGTTCACAGTAATGGTCCCTCGCATTTCGTCCACAGTGACCGACTGTTTGTGTCccatcattttttctttttggttgAGGGGTCGACATCGCACCACCACCTTCACATTATCGCTGACCTCAGCCTTTTCTGGCTTATCAA
>TU97008
taaattaagaagTATACAGAGTACAGCACAGTAAATGTAAacattataatgtaaaataaaggtcACATTGTTCGAGTGCAGTGTGCATGTGATAGctcataaaactaaaacaaaatacagttaGTCAGTGTGAAATGGCAATACAAGCGTAGGGGGGTAAACAGCATGCAGGTTCTCCAACCCCTCCCCCCTCCAAATCCTACAAAATGAGGTTAGCTGCACACGATAAATACACAAAGTAAAAGACTACAGTGTAACTGCAAACTGCCAAATAGTACAAGCATCAAGCATGTGATTCATATCTAAAGCAGCTTGCTCAAGACGACAGGCTAATCAGTTAGAGCATCTGAATCGTAATATCCTGCTCCTGAGGCTTTCAGGTGTCCTGCACtgcactgaactgaactgaacagacAGCGACACAAAACCCAACACTCTAGTAACAGCTCCAGCTCTGTGGAATAAATTGAGTCTTTAGCTCAATGCATTTACTGAAATGAATCAGTGAGTCAGGGCTTTTAGATCAGCAGTTAAGAAGCAGGTAACATCATTACTCCTCTATATGTACACTAGATTGATTTGCTCATTTCTTCAACAacaatttaaatgtgtttagtcAGTTTGCTTACATCTTTACACAATTCACGTCAAATAATTCTTAAACCTCATGAAAGGACCAGCCTGGACTGCAGTCAGAGACGGAGATGAAGCTCACTGCAGGAGGGAGTCGATCACTGTATCTGGCCTAGATGAGCgtttcCTGCGGCTAGTCTTGGGCCTTGACTTGCCACCTTTTGAAGTCCTGGGCCTCTCCAGCTTCATCAAAGACTGCCGCATGCTCTCCTCCGTATACGCAAGATACACGTGAGAGAGGTCCACTTCAAACGGATCCTTTTCCTTCTTGTCTGGCACTGGGGTTTGTTTTCTCATGTTGTTGCCAGTATAGGCCAcacatttCAGTTGCCATTCACCAATATCTTCATTCCAGTGTACATAATTTTCAATCATTTCCTGGTATTCCTGAGGGATGAAATTGTCGATGATGAGCATCTGCAGGCGGAGTTCTCGGCTGAGTTGGCGGATGTTCTCCAGTAGCCCCTCAATTTCCCTGTGATGCTCCTGCTGCAGGTCTGCCCTCTGACTTTGCAGCCATCAGCATGGTCCAGACTTTCTTTAATTTCTTGGTCTTGCCCTGGGCCTCCTCCTGCAAACTGGTGTATTTCTCCTCAATGTCCAAGCGCTCTTGCTCCTTCTCTTCCAGTTCTTTGCGCAGCTGCTCAGCTCTTTTCCGTCGTTCCTCCAGTTCATTGTTGGACTCCTCCAAAAGCTTTTCCTGCTCTTCAGCCTTGGCCAGCAAGTCAACACCTCCTACAATAACCTTCTTCTCCAGAGCAGAGAGCTTCTCTAGCAATAAGTGATGTTCTTGTTGTGCTTTCAGTaggtctttttctcttttctccagCTCTGCTCGTGCTTtgttcctctcctcctcctccatgtcCAGCTTGGCCTCCAGGGCCTTGCGTTCTTCTTCGATCTTTGCCTGCATCTCCACCATCTTGTCTGGAGACATCTTCTTCTTTCCTGTGAAGAAGTGGGGTACCACCAGTACAGTCAGTTCAGTAACTTAGGTAGCAATATCAATGAAAGCAGAAGCTGGCTTTATGGCTCATATATGGTggatatatactagtgcatcttagaAAAAAGTGAATATGATTgcaaagttactttttttcag

Function

symbol description
kif3a Predicted to enable ATP hydrolysis activity; microtubule binding activity; and microtubule motor activity. Acts upstream of or within several processes, including Notch signaling pathway; cilium assembly; and photoreceptor cell outer segment organization. Part of kinesin complex. Is expressed in several structures, including eye; heart; integument; liver; and pleuroperitoneal region. Orthologous to human KIF3A (kinesin family member 3A).

NR:

description
PREDICTED: kinesin-like protein KIF3A isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97006 True 2802 lncRNA 0.47 16 7424704 7441750
TU97008 False 1741 lncRNA 0.44 8 7424704 7431553

Neighbor

gene id symbol gene type direction distance location
LOC103023202 NA coding upstream 212208 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 251156 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 484342 6933390 ~ 6940362 (+)
LOC103042411 LOC108430989 coding upstream 705676 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 790829 6605304 ~ 6633875 (+)
LOC103027052 LOC108430977 coding downstream 170962 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 229808 7671558 ~ 7674663 (+)
mars2 mars2 coding downstream 278130 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 998387 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 1233099 8674849 ~ 8687469 (+)
G71859 NA non-coding upstream 112840 7309782 ~ 7311864 (+)
G71858 NA non-coding upstream 118162 7306159 ~ 7306542 (+)
G71805 NA non-coding upstream 323979 7061692 ~ 7100725 (+)
G71810 NA non-coding upstream 366429 7057734 ~ 7058275 (+)
G71808 NA non-coding upstream 371380 7053023 ~ 7053324 (+)
G71891 NA non-coding downstream 31111 7472861 ~ 7473404 (+)
G71892 NA non-coding downstream 35716 7477466 ~ 7477724 (+)
G71894 NA non-coding downstream 41913 7483663 ~ 7484151 (+)
G71895 NA non-coding downstream 44420 7486170 ~ 7486410 (+)
G71910 NA non-coding downstream 56028 7497778 ~ 7498270 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 539163 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 885910 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1467685 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1745830 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 1919066 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1427378 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1701149 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2526756 9968506 ~ 9970042 (+)
G72621 NA other downstream 2636829 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2831169 10272919 ~ 10626964 (+)

Expression


Co-expression Network