G71917


Basic Information

Item Value
gene id G71917
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7527329 ~ 7527791 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97050
atcaacacggaatggtgtaacaacgctgtgactgtcgccaaacactgctctccgctggtggagttcctgatagtcaagtgcagacctttttatttagtacgggagttctccgccgtgctaatagctgctgtctacattccacccagcgctagcattggtgctaatgctaaagaggctctgtgtgaactctatcggactatcagcgatctgcaaaacaaacacccagacggactgtttattatcgccggagatttcaaccacgcaaatctcaagtcagtgctccctaaattccaccaacatgtgaactttgcaacgagaggagcgagcgcgttggatcttgtttacacaaacatccccagcgtgTACCGGgtggagccccgcccccactatgctttctcggatcacatgtgtgtttggctgacaccaacatacacaccactcatcagacgctccagaccagttc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97050 True 463 lncRNA 0.50 1 7527329 7527791

Neighbor

gene id symbol gene type direction distance location
LOC103023202 NA coding upstream 314833 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 353781 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 586967 6933390 ~ 6940362 (+)
LOC103042411 LOC108430989 coding upstream 808301 6678596 ~ 6719028 (+)
LOC103026234 NA coding upstream 893454 6605304 ~ 6633875 (+)
LOC103027052 LOC108430977 coding downstream 84921 7612712 ~ 7652490 (+)
LOC103027348 LOC103027348,LOC108430938 coding downstream 143767 7671558 ~ 7674663 (+)
mars2 mars2 coding downstream 192089 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 912346 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 1147058 8674849 ~ 8687469 (+)
G71910 NA non-coding upstream 29059 7497778 ~ 7498270 (+)
G71895 NA non-coding upstream 40919 7486170 ~ 7486410 (+)
G71894 NA non-coding upstream 43178 7483663 ~ 7484151 (+)
G71892 NA non-coding upstream 49605 7477466 ~ 7477724 (+)
G71891 NA non-coding upstream 53925 7472861 ~ 7473404 (+)
G71928 NA non-coding downstream 49919 7577710 ~ 7652863 (+)
G71931 NA non-coding downstream 147752 7675543 ~ 7675776 (+)
G71932 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678 non-coding downstream 148601 7676392 ~ 7685337 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding downstream 172091 7699882 ~ 7718943 (+)
G71944 med12 non-coding downstream 205651 7733442 ~ 7736160 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 641788 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 988535 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1570310 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1848455 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2021691 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1341337 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1615108 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2440715 9968506 ~ 9970042 (+)
G72621 NA other downstream 2550788 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2745128 10272919 ~ 10626964 (+)

Expression


Co-expression Network