G71932 (ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678)


Basic Information

Item Value
gene id G71932
gene name ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7676392 ~ 7685337 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97066
CCTTTCACTGAAatctttattaagaaaaaaaaaaaaaatcaacaagtCAGTGGTTTTATCTACTGCTACTTTGGCATCATAAATTACAGCAACACAGATCACTGAAGAAATAAAACTTGCACTTTACACGCTCAGGCGTTTCACTGAATGTTAAATTAGACCAGTAGACTGAAACGCTTTGCATCTGTTCTTGATTTTTTGGTCCtgataataataacagcaaaatagtaataatagtaataataataatagcaaaatGATTTTGTATAATCACACCAATAAGAGAAAGACTAAATCattcatatatatttgcataagGCCTAATATTTCCCTGACTTTGAAATTGGCTGTTGCTTTACCTTCAATGTATCTTCAAAGTGCGTGTGTAAATAACATCTGATATTACACTGTTCCTAATACACTACTCTCTGTAAttcacaaaaaagaagaaacgtTTGTTTACAATACTTACTCACAAAGTAAAACTAAAATTTCCCCAGCACTGTTTATGAGAAAACTAACATGCCCATTGCATCACCCAAACTATCAGCTGGGTATATCGTGAATTTTGCAAGGAAATAAGTGACTGATTCTTATAATCTTCGGCGTATGCTAGTTAAGAAATATTAGCAAAAGAGAATGCATTAAATGTAGCGACTGCAGATTGCACTGGATATTAGTAGCTGATAAATAGATGATTGGAGGACTATTAACATCCTTGTAAATGTACCTAAGTGTACCTAAACCTTTAATTCATTATAAAGCAGTATGTAGACATTAATAGCGGACATACTCTTCTTTTCTCCGCTTTCTACCTCCTGAAAATTTGAAGCTTGAGTTTTGCCATTTTGTTGATGTCATAATAGTCCTGAGGTGTAAAATCTTTAATAGATAAAAAGCACTCTGGTtcgaggaagagtggagaaggAATGATCAGCCATGTTGCGCACTCTTGAGTAGTTCACGAATCCTCTGAAGAACAGCAGGaaccCTACAACCAGGAAAACCCACCACAGCCAGTACTGCCCATCAAAATATCCAGGAAAGTATGTGGAAAACCTGACAATCAGGACCCATTTAACCAAGGACAGCCCGAACCCAGAGACAGCACCGTATCGCCCTGCTGCTGAAGTGGTGAGGCAGAAGGACAGGAAGAAGCCAATCCAGTTGAAAAGGAAAGCCaGAAAAAGGTCAGCATGAATATGCCATCATTTCCGACTCGCAATTGGTCGACATCGTCAAAGTCATCTCTGGCAACAAAATCCTCGTCTCTTGGTGCGACGAGAGGAACACTGGACTCAGCCTTGGTCCGCTCTGCTTCATCGTATGAAGGTAAAGAAGTGGCAACATTGTATGAAGGAGGTTTGGGATAGTTGCCTTCTTCTTTGTAGTCAAAGAAAGCTGCATCTGCTGCAATGCTGTTGTACGGTGGGGGAGCGTCATTTGCCTCCTGGGGCACCTCAGGTGTCTCCTCCTCATTAGTCAACTGTCGGTATCCGCTCCTCTGCTCAGCCATCCTTCGGTTCTTCGGGTCCGAACTCTTAATTCATACGATTATCTACAGAATTAAAGATCCCCGCGGGGCTGTCTCTTCGTCCCCGGGTTTTAGCAGCTCTGCTGGGGCGCTACGGAACTCACAGCTCTGGTTAAATGGAGCTACAGCCCTACAGCCATGACCCCACTGCTCATGCTCAGTCCGCC

Function

symbol description
ndfip1 Predicted to enable WW domain binding activity. Predicted to be involved in metal ion transport; positive regulation of protein ubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within vacuolar transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus; endoplasmic reticulum; and perinuclear region of cytoplasm. Is expressed in axis; nervous system; notochord; and pronephric duct. Orthologous to human NDFIP1 (Nedd4 family interacting protein 1).

NR:

description
NEDD4 family-interacting protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97066 True 1701 lncRNA 0.41 8 7676392 7685337

Neighbor

gene id symbol gene type direction distance location
LOC103027348 LOC103027348,LOC108430938 coding upstream 1729 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 23902 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 463896 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 502844 7139036 ~ 7173548 (+)
bnip1 bnip1,bnip1a,LOC108430943,LOC107598374,LOC107756689,LOC105024416 coding upstream 736030 6933390 ~ 6940362 (+)
mars2 mars2 coding downstream 34543 7719880 ~ 7725813 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 754800 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 989512 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 1006613 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 1124691 8810028 ~ 8819533 (+)
G71931 NA non-coding upstream 616 7675543 ~ 7675776 (+)
G71928 NA non-coding upstream 23529 7577710 ~ 7652863 (+)
G71917 NA non-coding upstream 148601 7527329 ~ 7527791 (+)
G71910 NA non-coding upstream 178122 7497778 ~ 7498270 (+)
G71895 NA non-coding upstream 189982 7486170 ~ 7486410 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding downstream 14545 7699882 ~ 7718943 (+)
G71944 med12 non-coding downstream 48105 7733442 ~ 7736160 (+)
G71985 NA non-coding downstream 88504 7773841 ~ 7775533 (+)
G72000 NA non-coding downstream 175948 7861285 ~ 7861562 (+)
G72001 NA non-coding downstream 181905 7867242 ~ 7884724 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 790851 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1137598 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1719373 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 1997518 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2170754 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1183791 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1457562 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2283169 9968506 ~ 9970042 (+)
G72621 NA other downstream 2393242 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2587582 10272919 ~ 10626964 (+)

Expression


Co-expression Network