G71944 (med12)


Basic Information

Item Value
gene id G71944
gene name med12
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7733442 ~ 7736160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97086
CCTCTTGCTTGCTGGTAGATGgagtcttctttttcttcttcttcttgttggCATCCGGGGGCACGCTGGTCACATTCTTTTCCGATTTCACCGCCTCCACCATCTTCTTCTCTGGTTCTTGTGGCACGGGAGTAGGaggctcctcctcctctggcGGCAGCGGGAGGGGCTCCAGGTAATAGCTGCGTGGTCTGGGTTTCACGTGGGTGTGGTAGAGGAGGAGCCTTTGCTGTTCTTCGAAGCGAGTGACCTTGCGGTCGACCCGAACTGTTCCGAACCAGCCCCAAGAAAGTGGAGCAGAGTGCTTTAGGCCCTCAAACACATCCCACGGTGAGATCTTCTGCTTCGTCGACACCTGCAGGCCCTCTTTCTCAAATCCAGCGATTTTGTTGCCCTTGGTGTCTATGAGTGAGCCCTGGGGTTCACAGGTAATGACGTCCCGAGTCTGCTTAGGCAGAGGCAGTAACTGTCGCACTTTCTCCAAACTCTCCGACTGACGATCCCCCAACTCTTTCCTGAGTTTCTTCACCAGGTTCATGTAAGCCCTCTTATTCTCCTCCATGCTGCCCTGAGAGATACTAGACATATCTGCTGCCAGAGTCCCGTTAATAAGCACACTCAGCATGTCCAGTACGGTGGTGAACAGCTcaTTATTTGACTGCATGTCCACAGTCCCACTGCTGATGATGTCCAGGAGAAGCACCGCCCACTCATTGGTTTGCTGCGTGCTTCTCTGAACTGTGTCAAACATCCCACCCACCTAGAAAGAAGGAGACAAAAAGTGAGTGACCAGAGAGCACAGACCTGTAAAGTGAACACAGCACATGATTTActatagtaagcttagactgTAGAAATAAAAGATGAAAGGCAAAGTCCCTCACCAAATTGAGCCGCAGCTTCAGAGCCTCGTGCATCATCTGCTTGGCCTTGCAGTCATCCTGGTACTGGTCTTCACGCCAGTTGGTGACAATCT

Function

symbol description
med12 Enables DNA-binding transcription factor activity and promoter-enhancer loop anchoring activity. Acts upstream of or within several processes, including animal organ development; embryonic pectoral fin morphogenesis; and iridophore differentiation. Predicted to be located in nucleus. Predicted to be part of mediator complex. Is expressed in several structures, including brain; head; immature eye; intermediate cell mass of mesoderm; and liver. Human ortholog(s) of this gene implicated in FG syndrome; leiomyosarcoma; major depressive disorder; phobic disorder; and syndromic X-linked intellectual disorder Lujan-Fryns-type. Orthologous to several human genes including MED12 (mediator complex subunit 12).

NR:

description
PREDICTED: mediator of RNA polymerase II transcription subunit 12 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97086 True 976 lncRNA 0.52 4 7733442 7736160

Neighbor

gene id symbol gene type direction distance location
mars2 mars2 coding upstream 7629 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 58779 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 80952 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 520946 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 559894 7139036 ~ 7173548 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 703977 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 938689 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 955790 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 1073868 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 1090354 8826514 ~ 8857516 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding upstream 14499 7699882 ~ 7718943 (+)
G71932 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678 non-coding upstream 48105 7676392 ~ 7685337 (+)
G71931 NA non-coding upstream 57666 7675543 ~ 7675776 (+)
G71928 NA non-coding upstream 80579 7577710 ~ 7652863 (+)
G71917 NA non-coding upstream 205651 7527329 ~ 7527791 (+)
G71985 NA non-coding downstream 37681 7773841 ~ 7775533 (+)
G72000 NA non-coding downstream 125125 7861285 ~ 7861562 (+)
G72001 NA non-coding downstream 131082 7867242 ~ 7884724 (+)
G72009 NA non-coding downstream 304887 8041047 ~ 8041971 (+)
G72011 NA non-coding downstream 410469 8146629 ~ 8212203 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 847901 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1194648 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1776423 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2054568 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2227804 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 1132968 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1406739 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2232346 9968506 ~ 9970042 (+)
G72621 NA other downstream 2342419 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2536759 10272919 ~ 10626964 (+)

Expression


Co-expression Network