G72001


Basic Information

Item Value
gene id G72001
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7867242 ~ 7884724 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97161
tattcaaacatttacagagtatatgaacaaaaaaaaacgttctatGCAGCTGATCGCAACCTATACAGAACGCAGAGAAGAAATATATCCATTTTCATTTGTCTTTTCTTAAAAATCAGGAGTCAAACGAGGGAAAACGTGAAACCATGTCGACAGATTAGTCCCCAGTTCTCAGCCTGGTTCTGTGCTATGGGTATCCGAGTCTCCGATGCGACGGTGAGTCACAGCTGCTGTGTTTATGGGTGACTTGGACCAGTCCAGCCACATggcactgacacacacacatacatacacacccacacacacacacacacacacacacacacacgtatacgcCCAAGCGCACACACACCCTAAAATCACCTCACATGCAAAAATGAACAGCTCCAGCTATCAGCGCCCTCAGATCTACTGGAGAAACAACAGCAGTAAATTGATTTCCTTTTGCTCCATTAATGAGTCTGTCTTAGATGATTCATCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97161 True 483 lncRNA 0.44 2 7867242 7884724

Neighbor

gene id symbol gene type direction distance location
mars2 mars2 coding upstream 141429 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 192579 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 214752 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 654746 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 693694 7139036 ~ 7173548 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 555413 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 790125 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 807226 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 925304 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 941790 8826514 ~ 8857516 (+)
G72000 NA non-coding upstream 5680 7861285 ~ 7861562 (+)
G71985 NA non-coding upstream 91709 7773841 ~ 7775533 (+)
G71944 med12 non-coding upstream 131082 7733442 ~ 7736160 (+)
G71936 hspa4,LOC108430974,LOC108274676,LOC105011245,LOC100380717 non-coding upstream 148299 7699882 ~ 7718943 (+)
G71932 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107553337,LOC107677723,LOC107741079,LOC108274678 non-coding upstream 181905 7676392 ~ 7685337 (+)
G72009 NA non-coding downstream 156323 8041047 ~ 8041971 (+)
G72011 NA non-coding downstream 261905 8146629 ~ 8212203 (+)
G72171 NA non-coding downstream 500951 8385675 ~ 8386756 (+)
G72175 NA non-coding downstream 507537 8392261 ~ 8392477 (+)
G72183 NA non-coding downstream 516522 8401246 ~ 8401478 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 981701 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1328448 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 1910223 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2188368 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2361604 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 984404 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 1258175 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 2083782 9968506 ~ 9970042 (+)
G72621 NA other downstream 2193855 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 2388195 10272919 ~ 10626964 (+)

Expression


Co-expression Network