G72023


Basic Information

Item Value
gene id G72023
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 7925394 ~ 7929086 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97188
atataataataattttagtcTGACTAATCTAATTAGGATGCAGTCCAGAAACGAAGTCACACATTTTAAACCCATTAGAAATACTACAAATAAATATGTGCAATATAATTTAGACATTAATATGAGTTTTTGACCTTAATAGGTGTCTGATCAGTCATGTCATGTTAGTAATGTCAGTAATTTAACTTGTTTTGTTCATTGTCTACAGCTGATTATTCTAAGGTTAAAAGCTGAATCTGTGCCAAACTCAAATTTACACTTTGTTAAAAGTCCCTGACTAGAACTCATAATACACTACTAAGACCTTTAGAATCATCTCTGACCCCTTATCACTTGTCACTTCAACTGTCCTCATAGTTTAAACTACATAAAACCCAAAGATTTAGACATTTGAACCCCTTGAACCTCGTAATTGCCGCTTGCATCTGTATTATCGTACTGGTATTAATTTGCATTAGTTTTCACTCCTTCTTTAGGGAGTGATAAGGtgctcacttacatttacatttcttaaaatactGTTATGATTATCTTATTTTGTCTAAATTTTAAATGAAGACTTTATTCATGTCTTGACCTTAATAAGTGTCTTATTATCAGAAATGTCAgacttttacttattttattcaatGTCTGCAGCTTATTATTCTAAAGTTAAAAGCTCAATCTGTACAAAACTTAAACTTCCACTTTGATTAAAGTACCAAACTATGACTTAACTAATAGCTTTTGAATCATCATCTCCTGATGACCCTGTATCACTTGTCAAACTAGACATGGCCTCATGGGGTCAATCTGCATTAGGAGCCAAAGAATGGCTCATGCTTGAACCCCGTAATTGCCACTTGCTTTTGCATTATCGTATCGTTTTAATCTGCTATTAACTGGTTTCCACTTTGCCTTTATAGAGTAATACAGTGCTCACAGAcacttacagctctgaaaatactgttaaaattaTCTTATTTAGCCTCAATTATAAATAAAGGCATTATTCAGTTCCTTGACCCTGTAGTACTTATCCCAACTACTCTTAATTTAAACTGCATTAGGACCCAAAGAATGGATTGTACTTCAATCCCATAGTTGCAAAGTAAATCTACAGCTCTAGATAAAATTCAGcgtttgaatcagtttctcagattttgctatttttaggtttatgtttgagtaaaatgaacattgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaatattgtcatttagagcatttatttgcagaaaataagaaatggctgaaataacaaaaaagatgcagagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagatttagtagtttagaaatcaatatttggtggaataagcctggttttaatcacagttgtcatgcatctccTTTCATGCggactcctccaccagttttacacactgcttttggatacctttatgccactcctgatgtgaaaattcaagcagttcagcttggtttggtgacttgtgattatccatcttcctcttgattatattccagaagacAGATGTTGGGAAAGTCATTCACCTCTTGCAGCTTCACAACTCACTATTGTCATTTTCTATTCACAAGTCTGTCATGACTATGGAAGACCCCCTATACAGATGTTACCATGTCATTTTTTAATCCCACAGAGCAGGTTTATTAGCAGTTTCATTGAGATAGTAGATACATACATTACAgtctacatacagtatatttaagGTCATTTCAGTGAAGATTGGAGTCCAATGAGTGCTTTTGCTTTTAAAGGCTATCACATTCCCAGATTTTGCTGTTAGTGTGGTTTCTCCACCGCATAACCCCCCTCTCCCCCTAATGCCCCTTGTGAGGTTATTCCAGTAAAGCTAGAGACTCTCACTTAAGACAGAATTCACATGAGGCAGCGTCTCATAACTGATCAAAACTCtgatttattagatttattattGTGGAATTGCAGCTCGCTTAAGCAATCTGTTCACCAGCGGAATGTATCTGTCACTTTAATGCCAAGTgaaatgtcattttttacaCACGTTTTATCACTGAGATTATTTAACTTGACAGGAAATTAATGAGGTAGGACTAACCTCCCCTGGTATTTAGTGCAGTCTCCCCCTGTTTTATCAGGAGAAGACAGACACGTCaacagtgaagtgaagtgattCTATCAGTAAGGAGAGGAATAAGCCCATAAAATACAGAGCTGTAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97188 True 2253 lncRNA 0.35 2 7925394 7929086

Neighbor

gene id symbol gene type direction distance location
med12 med12,LOC106604460 coding downstream 157033 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 206338 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 228486 7690185 ~ 7696908 (-)
LOC103026574 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 coding downstream 240028 7676287 ~ 7685366 (-)
LOC111193047 LOC108430978 coding downstream 336812 7567400 ~ 7588582 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding upstream 805991 8735077 ~ 8758128 (-)
mfsd7 mfsd7 coding upstream 1323780 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 1615852 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 2029434 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 2144143 10073229 ~ 10093613 (-)
G72022 NA non-coding downstream 46078 7878679 ~ 7879316 (-)
G71975 NA non-coding downstream 258842 7656662 ~ 7666552 (-)
G71914 NA non-coding downstream 403653 7521532 ~ 7521741 (-)
G71911 NA non-coding downstream 426911 7497781 ~ 7498483 (-)
G71900 NA non-coding downstream 581960 7343234 ~ 7343434 (-)
G72118 NA non-coding upstream 387565 8316651 ~ 8316977 (-)
G72312 NA non-coding upstream 447001 8376087 ~ 8376585 (-)
G72315 NA non-coding upstream 471782 8400868 ~ 8401244 (-)
G72317 NA non-coding upstream 512679 8441765 ~ 8442726 (-)
G72329 NA non-coding upstream 554272 8483358 ~ 8497873 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 83114 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 334840 7551185 ~ 7590554 (-)
G71862 NA other downstream 612468 7309775 ~ 7312926 (-)
G71826 NA other downstream 867751 7057110 ~ 7057643 (-)
G71771 NA other downstream 1100638 6777239 ~ 6824756 (-)
G72336 NA other upstream 710452 8639538 ~ 8645601 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 1236792 9165878 ~ 9174309 (-)
G72453 NA other upstream 1259313 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 1871969 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 1927313 9856399 ~ 9902893 (-)

Expression


Co-expression Network