G72171


Basic Information

Item Value
gene id G72171
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8385675 ~ 8386756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97352
AGTAACGAAGTATTAtttatgaaataacaaaaactgaaagtgaaagttctctttaactgaaactaataaaaacggtaattaaaagaaaaaaataaaacgaactgaaattgcGGATTGAATACCCtaattttcgtgtttgttaatttatttataagcgctgttatAACTACAACAGTTTAACAGCGGGTGGTGTTGTGCCGTTTCTGCCCCCAAAGGGGAGCCGGACAGCGCCCGAGCTAGCCGCGAAATAACGACAGAAAACCCTGAGTAAACTGTagaattctgtatgggattagaatatgtGCGCGAAGGAgataaaaaaggagagaaagaagagaaacaggagatgaggaatatttgagaagcagctgtaactttacctgtgagtaactCACATAGAACACCCCACTgcaggataaactgataaatctgatcCTTTcggtggttgttttttttttttttttttttttttttattgccactCCAGCACAAATGTGGCTATTTGTGGCGATAATTTCggtgaaaattagtgaaacctgtagagtttagtgagtttttgctgtatgatcTCCTCAGTGAGAATCCCTAACCCATAACCAATCAGTGAGCTCCAACTGCTTACCCCTCCCACTGCCCTTTCATTGTGGATGCGCAGAATGTCTTAAACATCCTGTTTTTCAAAGTACAGATTTGGAACATCACGTGGTTAATATACCGTCACTATTTTACAATACCGTCACCAATGTTATATACCGTGGTATACCGAAATACCgtcataccgcccaaccctacctgacactcagagcagcctatgcctttcagtattttaatcaggacacccAAAGTAAACTATATTTCCAAAATGTAAAcgttttagtctaaataaataacttctaaataactacttagtaaactatataaagtagtgcgcacacatACCTAGCTTtggtttgagtaaagcaggtagtttcacactttttctgtggacacttttgagtcatttactgatattatttggtttgaaacatcatataaataagtttgaagccctaaaagtaaataatattggttggggaaggaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97352 True 1082 lncRNA 0.37 1 8385675 8386756

Neighbor

gene id symbol gene type direction distance location
mars2 mars2 coding upstream 659862 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 711012 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 733185 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 1173179 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 1212127 7139036 ~ 7173548 (+)
spock1 spock1,LOC107747099,LOC107655663 coding downstream 53381 8440137 ~ 8641348 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 288093 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 305194 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 423272 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 439758 8826514 ~ 8857516 (+)
G72011 NA non-coding upstream 173472 8146629 ~ 8212203 (+)
G72009 NA non-coding upstream 343704 8041047 ~ 8041971 (+)
G72001 NA non-coding upstream 500951 7867242 ~ 7884724 (+)
G72000 NA non-coding upstream 524113 7861285 ~ 7861562 (+)
G71985 NA non-coding upstream 610142 7773841 ~ 7775533 (+)
G72175 NA non-coding downstream 5505 8392261 ~ 8392477 (+)
G72183 NA non-coding downstream 14490 8401246 ~ 8401478 (+)
G72192 NA non-coding downstream 33308 8420064 ~ 8420305 (+)
G72202 NA non-coding downstream 51114 8437870 ~ 8438095 (+)
G72209 NA non-coding downstream 97167 8483923 ~ 8484763 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1500134 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1846881 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2428656 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2706801 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2880037 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 482372 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 756143 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1581750 9968506 ~ 9970042 (+)
G72621 NA other downstream 1691823 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1886163 10272919 ~ 10626964 (+)

Expression


Co-expression Network