G72209


Basic Information

Item Value
gene id G72209
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8483923 ~ 8484763 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97390
CAGAAACTGTAATATCTAAAGGTGGACTAAAGGACGGTGCTAacgaaaagaaaataataaaaccaaactaaactgcctaaccaaaaaactaaactaaccaAAATACAGAAGTAGCACCCGCCCCTAACCTAGTGTGTTTAAACAAAAGTGCTCCtgcgtgtgtgtaaatgtagggCGCCCATCTTACCTGTCCACACAGTAGACAAACAGAAGTGAGGTACAATAATTAGTGTGCTCAAACAATGTGAGTTGTTACCAAAGTTTAGATTTAAGAGCTAGAGTGTAGATTTAAGTATACATTGGATCAGAATCAATAAACTCAGCACAATTGGACTAGAGTGCAACAAAGGATCTACACAGGATCAGAATGAACAAACTCACAGCACAACTGTTCAACAGGACTACCTCAACATTAACTGGGCagcaaacacactcactcagatgcacacactcttaaatcgctctcactctcacaaccaGCGTTTGTATCTGCCGCCTCGGACGCGCTCACACCGCTCCATGCTGCTGCGTGCCATGCGGCTCCCCTCAGGCTCCTCTTACACTGTAAGGCCCGCCTCTTCCTGTCTCAGCGCAGAGTGTGATTGGCAGATGCAGCCAAGCTGGAGGAGGATCATTGGtgctcagccaatcaccttTCTCCATTAACGTAAcctacacagagagagagagagagagagagagagagcgagcgagagacacGGGgggaacaaaaagaaaaccaaaacacacGTGCACTCGTTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97390 True 763 lncRNA 0.46 2 8483923 8484763

Neighbor

gene id symbol gene type direction distance location
mars2 mars2 coding upstream 758110 7719880 ~ 7725813 (+)
LOC103027348 LOC103027348,LOC108430938 coding upstream 809260 7671558 ~ 7674663 (+)
LOC103027052 LOC108430977 coding upstream 831433 7612712 ~ 7652490 (+)
LOC103023202 NA coding upstream 1271427 7206477 ~ 7212496 (+)
LOC103023840 cpeb4,LOC108430986 coding upstream 1310375 7139036 ~ 7173548 (+)
LOC103031395 etf1,LOC108430956,LOC108275025 coding downstream 190086 8674849 ~ 8687469 (+)
LOC103028966 fbxw11a,LOC108430955,LOC105893085,LOC108275024,LOC107655672,LOC107588312,LOC107754486,LOC107747095 coding downstream 207187 8691950 ~ 8726635 (+)
LOC103033931 si:ch73-233f7.1,LOC108430952,LOC107596359,LOC107588310,LOC107754489,LOC107660897,LOC108274507 coding downstream 325265 8810028 ~ 8819533 (+)
LOC103031822 LOC108430951,LOC108275060,LOC107754491,LOC107747094,LOC107596358,LOC107655671,LOC107660898,LOC108275059,LOC107754490 coding downstream 341751 8826514 ~ 8857516 (+)
LOC111193048 LOC101884096,LOC108430950,LOC108430926,LOC108430927,LOC107588388,LOC108275115,LOC107747118 coding downstream 377357 8862120 ~ 8868955 (+)
G72202 NA non-coding upstream 45828 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 63618 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 82445 8401246 ~ 8401478 (+)
G72175 NA non-coding upstream 91446 8392261 ~ 8392477 (+)
G72171 NA non-coding upstream 97167 8385675 ~ 8386756 (+)
LOC111193079 NA non-coding downstream 299809 8784572 ~ 8793176 (+)
G72278 NA non-coding downstream 605113 9089876 ~ 9090618 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 657599 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 742752 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 1107544 9592307 ~ 9639931 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 1598382 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 1945129 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 2526904 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 2805049 5672718 ~ 5678874 (+)
G71414 gstp1 other upstream 2978285 5499908 ~ 5505638 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other downstream 384365 8869128 ~ 9036026 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 658136 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 1483743 9968506 ~ 9970042 (+)
G72621 NA other downstream 1593816 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1788156 10272919 ~ 10626964 (+)

Expression


Co-expression Network