G72263 (LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372)


Basic Information

Item Value
gene id G72263
gene name LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9142362 ~ 9151966 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97469
GTCACAGATCAGTTTTTAGACCGAGAGAAATGTtctgaatataatataacaataacagcTACTGATGAGGGTTCTCCTTCATTCTCCTCcaataaaacactaaatctGAAAATATCTGATGTAAATGACAACGCCCCTGTGTTCCAGCATCAGTCATACACCGCTTATGTGCTGGAAAATAACACACCTGGAGTGTCTATATTCGCAGTGACAGCAGCTGATAAAGACTCTGGTAACAACGCGCGTATTTCCTATTTTCTTGAGGATGTTCTCGTGAATGGAGTTTCAGCCTCGACTTATATTTCAGTGAATGCAGA

Function

NR:

description
PREDICTED: protocadherin gamma-A10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97469 True 317 lncRNA 0.40 2 9142362 9151966

Neighbor

gene id symbol gene type direction distance location
LOC111193090 LOC108438833,LOC108438834,LOC108274937 coding upstream 280 9137787 ~ 9142082 (+)
LOC103033934 LOC105891230 coding upstream 12132 9127307 ~ 9130230 (+)
LOC111193087 NA coding upstream 19571 9120530 ~ 9122791 (+)
LOC103033622 LOC108438830 coding upstream 42132 9097379 ~ 9100230 (+)
LOC107197811 NA coding upstream 48885 9092223 ~ 9093477 (+)
LOC111193089 NA coding downstream 4767 9156733 ~ 9158398 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding downstream 6988 9158954 ~ 9162743 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding downstream 19356 9171322 ~ 9174899 (+)
LOC107197946 LOC108438827 coding downstream 35278 9187244 ~ 9194515 (+)
LOC111188173 LOC108438827 coding downstream 44487 9196453 ~ 9225559 (+)
G72278 NA non-coding upstream 51744 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 349186 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 657599 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 704267 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 722057 8420064 ~ 8420305 (+)
G72285 NA non-coding downstream 75549 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 440341 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 445983 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 540703 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 556471 9708437 ~ 9710214 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 106336 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2256821 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2603568 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3185343 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3463488 5672718 ~ 5678874 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 816540 9968506 ~ 9970042 (+)
G72621 NA other downstream 926613 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1120953 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3719518 12871484 ~ 12897931 (+)
G73533 NA other downstream 5496863 14648829 ~ 14649551 (+)

Expression


Co-expression Network