G72278


Basic Information

Item Value
gene id G72278
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9089876 ~ 9090618 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97484
cgctcatattctaataccgtacagaattctgcagtttcctcaGAGTTTTCTGTCATTATTTAGCAGCTAGCTCCAGCGCTGTAAATATGAGCAATTCCGCGGACCGCGAGGCGCTGCGCGCTGCACCGCGCTGCTGACATATGAACCCCGGCTCCCCTTCGGGAGCAGAAACGGCACAACACCACCCTCTGTTAAGCTGCTGTAGTGGatacagcgcttataaataaattaacaaacacaaaaaatagggtattcaatctgtaatttcagttcgttttatttttttcttttaattaccgtttttattagtttcagttaaggggaactttcactttcagttttcgttatttcgttcgttttcgttaacagtAATACTTTGTTATATGGTGCTTCTCAGGccgtagctttatataaaataaaaatagtattaaaaaacagatgactatttcctggagcccgGACTGACCCGAGATTTTCCATtactttcctcgggccgggtctcGTCCGGgctgagaaataaaaatcaaagtatcctgctatttaaaagaatggaaaatttaataacaataataatatagttctgcatactagagtttagattgtctgcctaAaacccgagcgtgaacgcgagactgaacccgagcgtgaacgcgagactgaacgcgagctcatccgcgcgtttaaagctccgcagcatttaataaaaacagattaataGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97484 True 720 lncRNA 0.41 2 9089876 9090618

Neighbor

gene id symbol gene type direction distance location
LOC111193080 NA coding upstream 116470 8970578 ~ 8973406 (+)
LOC103029169 LOC108430921 coding upstream 128048 8958444 ~ 8961828 (+)
LOC111193082 LOC108430922 coding upstream 159635 8927031 ~ 8930241 (+)
LOC111193084 LOC108430922 coding upstream 185782 8902284 ~ 8904094 (+)
LOC111193081 LOC108275114,LOC107588388 coding upstream 193058 8894211 ~ 8896818 (+)
LOC107197811 NA coding downstream 1605 9092223 ~ 9093477 (+)
LOC103033622 LOC108438830 coding downstream 6761 9097379 ~ 9100230 (+)
LOC111193087 NA coding downstream 29912 9120530 ~ 9122791 (+)
LOC103033934 LOC105891230 coding downstream 36689 9127307 ~ 9130230 (+)
LOC111193051 NA coding downstream 43831 9134449 ~ 9153260 (+)
LOC111193079 NA non-coding upstream 296700 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 605113 8483923 ~ 8484763 (+)
G72202 NA non-coding upstream 651781 8437870 ~ 8438095 (+)
G72192 NA non-coding upstream 669571 8420064 ~ 8420305 (+)
G72183 NA non-coding upstream 688398 8401246 ~ 8401478 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding downstream 51744 9142362 ~ 9151966 (+)
G72285 NA non-coding downstream 136897 9227515 ~ 9227886 (+)
G72305 NA non-coding downstream 501689 9592307 ~ 9639931 (+)
G72306 NA non-coding downstream 507331 9597949 ~ 9651534 (+)
G72488 NA non-coding downstream 602051 9692669 ~ 9698998 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 53850 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2204335 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 2551082 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3132857 5871090 ~ 5957019 (+)
LOC103037414 NA other upstream 3411002 5672718 ~ 5678874 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other downstream 52281 9142899 ~ 9149419 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 877888 9968506 ~ 9970042 (+)
G72621 NA other downstream 987961 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 1182301 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3780866 12871484 ~ 12897931 (+)

Expression


Co-expression Network