G72306


Basic Information

Item Value
gene id G72306
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9597949 ~ 9651534 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97518
GATACGACGTACGGTTTTCGTACAATTGTCGTACGAAGTTTtcccatagaaatgaatggggggcccaGAGTTCTAACTCGCACACGagcagctctgcgcacggaaccccttctctcccctgctcctccagtactgtgagtgtatggaggagctgctgtatggagcagctatcagtcaaaagtttggacaccccggcaccccagccacggtttagcaaccacctattaactgcttagcaaccaccttagcaaccacctggaaaacgttagcaactgcctagcaaccacttagcaaccaccttagcaaccacctgaaaaacgttagcaactgcctagcaaccacttagcaaccacttagcaaccacctggaaaacgttagcaactgcctagcaacacttagcaaccactttagaaatgatagcaactgcctagcaaccacttagcaacaccttagcaaccaccaggaaaacgttagaaactgcctagcaacagcttagcaaccactttagaaatgaaagcaactgcctagcaaccacttagcaaccactttagaaacgatagcaactgcctagcaaccacttagcaacaccttaacaaccactaggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaatgacagcaactgcctagcaaccaaatagcaacagcttagcaaccacctggaaaacgttagcaactgcctagcaaccactttagaaatgacagaaactgcctagcaaccactaagcaaccacttagcaaccacatggaaaacgttagcaactgcctagcaaccacttagcaaccactttagaaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccatctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaaccccccggatatcatagcaacaccctagcaaccacctagcaaccacctagcaacacgttagcaaccaccccggataccatagcaacaccttagcaacaacctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaacaccttagcaaccacctggtttatgttagcaactgcctagcaacca
>TU97519
cctagcaacaccatagcaacaccttagcaaccgcctagcaacaccttagcaaccacctagcaaccatctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaaccccccggatatcatagcaacaccctagcaaccacctagcaaccacctagcaacacgttagcaaccaccccggataccatagcaacaccttagcaacaacctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaaccacctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaacaccttagcaaccacctggtttatgttagcaactgcctagcaacca
>TU97521
cctagcaacaccatagcaaccacctagcaaccatctagcaacaccttagcaaccaccccagataccatagcaacaccttagcaaccacctagcaacaccttagcaaccccccggatatcatagcaacaccctagcaaccacctagcaaccacctagcaacacgttagcaaccaccccggataccatagcaacaccttagcaacaacctagcaaccacctagcaacaccttagcaaccacctggtttatgttagcaactgcctagcaacca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97518 True 1248 lncRNA 0.48 4 9649147 9651534
TU97519 False 433 lncRNA 0.50 4 9597949 9651534
TU97521 False 270 lncRNA 0.50 4 9597949 9651534

Neighbor

gene id symbol gene type direction distance location
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 249522 9276546 ~ 9348427 (+)
LOC111188173 LOC108438827 coding upstream 372390 9196453 ~ 9225559 (+)
LOC107197946 LOC108438827 coding upstream 403434 9187244 ~ 9194515 (+)
LOC103034588 pcdh2g29,LOC108438829,LOC108438834,LOC107596372 coding upstream 423050 9171322 ~ 9174899 (+)
LOC111193086 LOC108438829,LOC108438834,LOC108274931,LOC108274933 coding upstream 435206 9158954 ~ 9162743 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding downstream 139737 9791271 ~ 9799463 (+)
tbc1d2 tbc1d2 coding downstream 175753 9827287 ~ 9853057 (+)
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding downstream 258872 9910406 ~ 9957528 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding downstream 322690 9974224 ~ 9977824 (+)
irf7 NA coding downstream 413882 10065416 ~ 10073101 (+)
G72285 NA non-coding upstream 370063 9227515 ~ 9227886 (+)
G72263 LOC108438833,LOC108438829,LOC108438834,LOC107588364,LOC107596372 non-coding upstream 445983 9142362 ~ 9151966 (+)
G72278 NA non-coding upstream 507331 9089876 ~ 9090618 (+)
LOC111193079 NA non-coding upstream 804773 8784572 ~ 8793176 (+)
G72209 NA non-coding upstream 1113186 8483923 ~ 8484763 (+)
G72488 NA non-coding downstream 41135 9692669 ~ 9698998 (+)
G72496 NA non-coding downstream 56903 9708437 ~ 9710214 (+)
G72500 NA non-coding downstream 66139 9717673 ~ 9717915 (+)
G72503 NA non-coding downstream 69437 9720971 ~ 9721882 (+)
G72514 NA non-coding downstream 121665 9773199 ~ 9773599 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 448530 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 561923 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 2712408 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3059155 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 3640930 5871090 ~ 5957019 (+)
LOC103043718 LOC103043718,LOC108442465 other downstream 316972 9968506 ~ 9970042 (+)
G72621 NA other downstream 427045 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 621385 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 3219950 12871484 ~ 12897931 (+)
G73533 NA other downstream 4997295 14648829 ~ 14649551 (+)

Expression


Co-expression Network