G72317


Basic Information

Item Value
gene id G72317
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8441765 ~ 8442726 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97534
ACTCCATTCCAGTGTGTTCTAGGTTACCAACCACCATTGTTCCCTTGGAATGCAGAGAGGACAGACGCCCCTGCTGTTGACGACTGGTTCACACACAGTGAGAGGGCTTGGGAACAGACACACGCACGTCTGGGTTTGGCTGTCAGACGACAAAAAGCACAGGCAGATCGACATAGAGGCCGGTTATTCCTGGTCCACTGGATGATGCCTCCCCTCTCTCATCACCACCTCCAGCTCTGGACATCGACGGCAGTCCTGCCTACAAAGTCAACACCATTGTGGATTCACGTCGGAGACGGGGGCACATCCAGTATCTAGTGGACTGGGAGGGGTACGGTCCCGAGGAGAGGAGCTGGGTGTCTACATCGGACATACTGGATCCCTCTCTCATTACGGATTTCCACTCCCGCAGGCCGGAACGTCCTGCACCCAGACCTCGGGGCCGACCCCCCGGCCGGACTCTTGGCGCTCCTGGAGTAGCGCGTAGGGAAAAGGGTTCTGTCACACCTGTTGCACTACACCTTTAAGATCCACCTCTCCTGAGTATTGAGGCTGACTCCTCCTCTCCCACACACCTGTGGGAGATCACTCATCTACAGGACTATATAAACTGGACTCATGCACTGCCTAGCTGCGAGATATTGCCACAGTGTGTCTTATCGAGCGTTATTGTTGTTACTGTTTTCCTGGTTTTTTGATCTATCGCTTTCCCTTGACTACGATTTTTGCCTAGCGtgtatattttctggtctttttgaACTTT

Function

GO:

id name namespace
GO:0006935 chemotaxis biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0097485 neuron projection guidance biological_process
GO:0007411 axon guidance biological_process
GO:0042330 taxis biological_process

KEGG:

id description
ko04340 Hedgehog signaling pathway
ko05217 Basal cell carcinoma

RNA

RNA id representative length rna type GC content exon number start site end site
TU97534 True 763 lncRNA 0.53 2 8441765 8442726

Neighbor

gene id symbol gene type direction distance location
enox2 enox2 coding downstream 266871 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 673404 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 722709 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 744857 7690185 ~ 7696908 (-)
LOC103026574 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 coding downstream 756399 7676287 ~ 7685366 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding upstream 292351 8735077 ~ 8758128 (-)
mfsd7 mfsd7 coding upstream 810140 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 1102212 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 1515794 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 1630503 10073229 ~ 10093613 (-)
G72315 NA non-coding downstream 40521 8400868 ~ 8401244 (-)
G72312 NA non-coding downstream 65180 8376087 ~ 8376585 (-)
G72118 NA non-coding downstream 124788 8316651 ~ 8316977 (-)
G72023 NA non-coding downstream 512679 7925394 ~ 7929086 (-)
G72022 NA non-coding downstream 562449 7878679 ~ 7879316 (-)
G72329 NA non-coding upstream 40632 8483358 ~ 8497873 (-)
G72338 etf1,LOC108430956,LOC108275025,LOC107742375,LOC105893093 non-coding upstream 222029 8664755 ~ 8782160 (-)
G72345 fbxw11a non-coding upstream 259157 8701883 ~ 8702315 (-)
G72357 NA non-coding upstream 283614 8726340 ~ 8727753 (-)
G72370 NA non-coding upstream 411170 8853896 ~ 8857516 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 599485 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 851211 7551185 ~ 7590554 (-)
G71862 NA other downstream 1128839 7309775 ~ 7312926 (-)
G71826 NA other downstream 1384122 7057110 ~ 7057643 (-)
G71771 NA other downstream 1617009 6777239 ~ 6824756 (-)
G72336 NA other upstream 196812 8639538 ~ 8645601 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 723152 9165878 ~ 9174309 (-)
G72453 NA other upstream 745673 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 1358329 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 1413673 9856399 ~ 9902893 (-)

Expression


Co-expression Network