G72338 (etf1,LOC108430956,LOC108275025,LOC107742375,LOC105893093)


Basic Information

Item Value
gene id G72338
gene name etf1,LOC108430956,LOC108275025,LOC107742375,LOC105893093
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 8664755 ~ 8782160 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97557
AAGGATATTGGTTTTAAGcaaatttaatacttttttgtcCCCCCATTCGCTACAGAAacccaggtaaaaaaaaatcccacactGTCATaaaatacagcagcagcagttgccagtaaaaaaaaaaaaaaaaagaaaagaaaaaaagaaatgcaaaaggacccagagagacagaggtagGGAAGGGTTGATGGAGgacaagagaaaaagaagggagggacataaagaaaaatatatttgtgtaaGAGGAGTGAGTCCAAAGGCGACTTGGACTGAGCAGAGTTACATCCTGGGCACGTGCTGTCGTTTAAATTCAGTAGGGAAGGAGAACAGGAGATTAAACAAAATGAGGCAAAGTCCTATCCAATCAGAGTGCTCTAAGGCAGGGGCATAATCATTAATTGATGAAGGCTCAGTCCTTCATTTGATTGACCGTTAACTCCTCCTTTTCAGCATCTGAAattgtctgcatgtgtgtgcatgtgtatagGTGTGGGTTTGTGGTTAATTAGGgtccacacactctcactgcaaAAGAAAGACGCATTTCTTTCCATATTTCTTCATTCGTTCATTCTTTCTTTTCGGTTCTCTTCCCATTTCAGTTCCGACTACCTAGTAGTCATCCAAATCGAAAAACTCATCTTCATCTCCCTGATATTCCATCCCTTGGAAATCCACTCTGTACCGCAAGATACCGCCAATTCCTCCAAAGCCCTTGACAAACTGTGAACCCTCCTGACTCTTGTCTGTGACTATTTCCAGCGTGGCTCCAAATTTCTTGTAACTATTAGCAAACCACTCCAACAGCGGCATACACTCGATCAGTTCATGCTCCTGCCCCGTctctttgTCCGTGAAGTGAGACTTGTCCTTCTCTTGCTCAGGTGTCAAATAAATGGTCTTCTCATCATTCTCTAATCCGTTTAGCTCAGCCCCATGTACTCGTAAGATGTATCTCATGGTGTCCAGGTTCTCGTAAACAATGAGGATCTCCACTGCTCCCATCTCCAGTGCCTTCAGCGTGTCCTCCACACCAAAACAGTACTTTCCCGTGTCCTGACTGATCTCATCAAAATAGCGACCTATAAGCTTCTTCTCTTGAATGAATTTGACGTTTGAAAGGACCTCAGCCGACAGCTCAATGGCTTGATTGAAACCATTCTCTCCACCGTAAGAGATGTCCACCAGCTTCAAAACCTTCGCCTGTAACCTCGGATCAAACATGTCAGATTGGCTGAGTTCAGTTTTAAAGTCTGCAGATCCAGCCAGAACCATTCCAGCCACGTTGACCTTATCATTGGACACAAAGAGCTGCACTGCTGTCTCTGCCACTTTACGCACATAGTTATGCCTCTTCTCCATTCTCAATCGTGCAAAACGCAGCGCAGACTGTCCTCCTCTACCGTGTTTTTTGGGAAGGTCCACTGTGAATTTGTGCAGCACTTCTCTAGTGTTGCCCTGTAAGGTCCCGAATAGTGCACCACTTCCATCAATCACGATGAAGCCAAACTTACTGTCATCTGACAACAATGCTGTCAGAGCTTCGGTATGAAATTTGTTGTCACAGAGATACAGCGAGGTATTGATGGGTTTGAAAGGCTCAAAGTCGATGTTGACTTTCTTCTCTTTGCCCTCTTCCGTCACAATGGTGCCGCAGTACACTACGAGACCATTAGGGGGCACTTTGTTGTAGAGTTTTAGTCTCTGCTGTACTGAAGTGATGGCTCCCAGCACAGACAGTCTGTTGACTCTGCTTTTGATATTGGAGGCTGTGCCAAACTCGTCAGCAAGCATCTTGGCTACTCTGGAGATCTGATCTTTAGGAGGTATGATCAATGAAATCATACTGGTCCCATtaCCTCTGGCCGCCTCCAAACTCTTGATCAGCTTCTTAATTTTCCAGATCTCCACGTTCCTGTCCGCGGCGCTCGGGTCGTCCGCCATCTTCCCTGCTAGTTAGTCCCTGTGCTTCTGGTGACCAGCAGCAGTTCTTCCCCACAGTGTCCAGCCCTCAGGATGTTAACACTGCAGCGTCTGGGTTCTTTGGTCAGTCTTCACACAGCTTGGCAGTTCCAACCTTACTGTATGTTAAACAAAATTCCATGGAAGGACCCATCGAACTGAAGGACTCTTCTGAAGAAGTTGATGACATTCTCAAACCCACAGTAGACCTGTGTGGGTATATCTCTGTGTTCCATTAAGAGCAGGACAGGTTGTGTTGTTTTATCAGGCTGCAtgtcatcagcagccggaggctctct
>TU97559
aaaagttttaaagtcaTAAAAGGTGtataatgtgattttattttttatataaacataatgaattttaaacaaataaaaaatcagtgACTGGGATCAAATGGTTTATGCTCTCACCGGATCAAACATGTCAGATTGGCTGAGTTCAGTTTTAAAGTCTGCAGATCCAGCCAGAACCATTCCAGCCACGTTGACCTTATCATTGGACACAAAGAGCTGCACTGCTGTCTCTGCCACTTTACGCACATAGTTATGCCTCTTCTCCATTCTCAATCGTGCAAAACGCAGCGCAGACTGTCCTCCTCTACCGTGTTTTTTGGGAAGGTCCACTGTGAATTTGTGCAGCACTTCTCTAGTGTTGCCCTGTAAGGTCCCGAATAGTGCACCACTTCCATCAATCACGATGAAGCCAAACTTACTGTCATCTGACAACAATGCTGTCAGAGCCTAGAgggaagaagaaagaaatactGCGCTGAGAGACTGTGTAAAACTCAGACAGTAGTGTATACTGCCAAAACAGTGAGATAAACTGACAGGGGTTAAAGAGTCAAGTGAAGCTCCACCTGCAGGACACAAAACAGCTGTTTAACACAGTGAGAGACGTGACAATCTGCAAAGATTGCTTTTAAACTGCAGTTCTGCTTAAAAGTCAGTGctgaacccttttttttt
>TU97560
CTCTCTGTGTTTACTGAGAAGTGCCAACTGTAGAGTTGAGGAACTGTTTGACTGAGAAAGCCTGAGAAAGTTTGTTTTTCTCACTTCTGAAACACTGCATCATGAGTATACCTTCACTGAGAGTTAGTCCCTGTGCTTCTGGTGACCAGCAGCAGTTCTTCCCCACAGTGTCCAGCCCTCAGGATGTTAACACTGCAGCGTCTGGGTTCTTTGGTCAGTCTTCACACAGCTTGGCAGTTCCAACCTTACTGTATGTTAAACAAAATTCCATGGAAGGACCCATCGAACTGAAGGACTCTTCTGAAGAAGTTGATGACATTCTCAAACCCACAGTAGACCTGTGTGGGTATATCTCTGTGTTCCATTAAGAGCAGGACAGGTTGTGTTGTTTTATCAGGCTGCAtgtcatcagcagccggaggctctct
>TU97562
cagtaaaaaaaaaaataaaaaaagaaatgcaaaaggacccagagagacagaggtagGGAAGGGTTGATGGAGgacaagagaaaaagaagggagggacataaagaaaaatatatttgtgtaaGAGGAGTGAGTCCAAAGGCGACTTGGACTGAGCAGAGTTACATCCTGGGCACGTGCTGTCGTTTAAATTCAGTAGGGAAGGAGAACAGGAGATTAAACAAAATGAGGCAAAGTCCTATCCAATCAGAGTGCTCTAAGGCAGGGGCATAATCATTAATTGATGAAGGCTCAGTCCTTCATTTGATTGACCGTTAACTCCTCCTTTTCAGCATCTGAAattgtctgcatgtgtgtgcatgtgtatagGTGTGGGTTTGTGGTTAATTAGGgtccacacactctcactgcaaAAGAAAGACGCATTTCTTTCCATATTTCTTCATTCGTTCATTCTTTCTTTTCGGTTCTCTTCCCATTTCAGTTCCGACTACCTAGTAGTCATCCAAATCGAAAAACTCATCTTCATCTCCCTGATATTCCATCCCTTGGAAATCCACTCTGTACCGCAAGATACCGCCAATTCCTCCAAAGCCCTTGACAAACTGTGAACCCTCCTGACTCTTGTCTGTGACTATTTCCAGCGTGGCTCCAAATTTCTTGTAACTATTAGCAAACCACTCCAACAGCGGCATACACTCGATCAGTTCATGCTCCTGCCCCGTctctttgTCCGTGAAGTGAGACTTGTCCTTCTCTTGCTCAGGTGTCAAATAAATGGTCTTCTCATCATTCTCTAATCCGTTTAGCTCAGCCCCATGTACTCGTAAGATGTATCTCATGGTGTCCAGGTTCTCGTAAACAATGAGGATCTCCACTGCTCCCATCTCCAGTGCCTTCAGCGTGTCCTCCACACCAAAACAGTACTTTCCCGTGTCCTGACTGATCTCATCAAAATAGCGACCTATAAGCTTCTTCTCTTGAATGAATTTGACGTTTGAAAGGACCTCAGCCGACAGCTCAATGGCTTGATTGAAACCATTCTCTCCACCGTAAGAGATGTCCACCAGCTTCAAAACCTTCGCCTGTAACCTCTGTTACCAAATTACACACAGACAATCCCGACATTAATATGCTGCTAAAATCTGTAGCTTCCATTTTTCTTTACCAATGTTACACATAATATTAGAAAgaaatttttaaaactttaaatcagGTTAgtaaacattttcatttaagaATTTCTAAGGAACAATAGTGTTTTGTCAACATGGCAGTGTGTGTTACTGAGCATGCACATCTAAAGGAAAAGAATACTAAGGACTTAAATCTCTCTCAGCTGGTATGACAGAATTATCAGGTTAAAT

Function

symbol description
etf1 Enables sequence-specific mRNA binding activity and translation release factor activity. Involved in regulation of translational termination. Acts upstream of or within protein methylation and translational termination. Located in cytoplasm.

NR:

description
PREDICTED: eukaryotic peptide chain release factor subunit 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97557 True 2261 lncRNA 0.45 12 8664755 8687466
TU97559 False 672 lncRNA 0.41 2 8681368 8682591
TU97560 False 428 lncRNA 0.46 3 8664755 8666837
TU97562 False 1364 lncRNA 0.41 6 8683223 8782160

Neighbor

gene id symbol gene type direction distance location
enox2 enox2 coding downstream 489861 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 896394 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 945699 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 967847 7690185 ~ 7696908 (-)
LOC103026574 ndfip1,LOC103026574,LOC108430976,LOC107756695,LOC107677723,LOC107664757,LOC107553337,LOC108274678,LOC105903889 coding downstream 979389 7676287 ~ 7685366 (-)
mfsd7 mfsd7 coding upstream 470706 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 762778 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 1176360 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 1291069 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 1384167 10166327 ~ 10184846 (-)
G72329 NA non-coding downstream 166882 8483358 ~ 8497873 (-)
G72317 NA non-coding downstream 222029 8441765 ~ 8442726 (-)
G72315 NA non-coding downstream 263511 8400868 ~ 8401244 (-)
G72312 NA non-coding downstream 288170 8376087 ~ 8376585 (-)
G72118 NA non-coding downstream 347778 8316651 ~ 8316977 (-)
G72370 NA non-coding upstream 71736 8853896 ~ 8857516 (-)
G72404 NA non-coding upstream 227267 9009427 ~ 9036029 (-)
G72436 NA non-coding upstream 334800 9116960 ~ 9126594 (-)
G72437 LOC107655635,LOC108438829,LOC107754498,LOC108438834,LOC107747110,LOC107754548,LOC108438831,LOC108274935,LOC107655634 non-coding upstream 340484 9122644 ~ 9143407 (-)
G72443 LOC108438833,LOC108438834,LOC108438829,LOC107596372 non-coding upstream 360310 9142470 ~ 9158122 (-)
G72336 NA other downstream 19154 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 822475 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 1074201 7551185 ~ 7590554 (-)
G71862 NA other downstream 1351829 7309775 ~ 7312926 (-)
G71826 NA other downstream 1607112 7057110 ~ 7057643 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 383718 9165878 ~ 9174309 (-)
G72453 NA other upstream 406239 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 1018895 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 1074239 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 1269792 10051952 ~ 10054034 (-)

Expression


Co-expression Network