G72436


Basic Information

Item Value
gene id G72436
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9116960 ~ 9126594 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97683
acttattaaGGAAAAACTCTCACCTGATCATGAGAAATATCACcgttcactttctctctctgcgcATATGTGAGTGTCTGAGTTCCACTTGTGTCCAAACTAATGATGCTCTCACTGGAAGGTCTGGCATATTTCAGATCACTCTTTCTGGAGTCAGTCGTCCTGCAGACTTCATAATTATACACATGCTGTAAAGTTCCGGTGCCTCCTACATCTGCGTAAAGTGGTGGATAATATGGAATAACAGGCAGATTGGCACCGGATTTGTAAAACATCCTCTCACGTCTCCATCTGTAGCATTTGACTGACAGTATGGCTATGATGGACACGATGAACAGAAAGGAAACTACAGCCAAGGCCAAGACTAGATAAAAAGTCAGGTTGTCGTTGTAATCCTTGTCGTGCGTAAAGTCAGTGAACTCCGAGAGCACTTCAGGGAAACTGTCCGCCACCGCCACGTTAATATTGACTGTAGCTGAACGAGAGGGCTGTCCGTTGTCCTCCACTACAACAGTGAGCTTCTGCTTCACAGCATCTTTATCGGTAACCTGGCGCACAGTTCTTATTTCTCCATTCTGTAAGCCCACTTCAAATAGCGCCCTGTCTGTAGCTTTCTGCAGTTTATATGAGAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTGGTCACGAGATAGCCCACCTCTGCTGAACGAGGCACAATTTCAGCCACCAAAGAGCCACCAGTCTGCACTGGATACAGAACCTGAGGTGCGTTGTCGTTCTGGTCCTGAATCACTATCTTCACACTCACATTGCTACTGAGAGGAGGGGAGCCTCCATCCTGAGCTATTACGCGGAACTGGAAATCCTTAATCTGTTCGTAGTCAAAAGAACGCACTGCGAGGATAACGCCACTATCAGCACTGACAGATACATATGAGGAGACCAAAACTCCGTTGACGGATGAGTCTTGCAGAATGTAAGAAACACGCGCATTCTGGTTCCAGTCAGCGTCTCTGGCTTTGACTGTGAATATGGAGACACCTGGAGTGTTATCTTCTGAAATAGAGGCTTCATATGAGCTCCTCTCAAAAACAGGAGCGTTATCATTCACATCTGATATCTGTAAGGAGAGAGTGACGCTGCTGGAGAGAGACGGAGTCCCCTCGTCAGAGCACATCACACTGATATTATACCCAGACTGTCTCTCTCGATCTAGATCGCTTTCAGTTACAAGACTGTAAAAACCATCTGACGAAGATTGTATGAGAAAtggaatattttcatttagtttacattttacaatcCCATTTTCGTGTTTATCAGCGTCTTGAATGCTCATCATTGCCACAACAGTTCCTGCTTTGGCATTTTCAGAAATCTGACTGGACTTGGACATTATACTGATCACTGGTGCATTGTCATTTTTATCATTGACATCAATAATGACTTTGCATGAATCCGTGTGACCACCCTGGTCTCTGGCTTCAACTACAATCTGATACTGTTTGAATTTTTCATAATCAACATTTCCTATTAATTTTACTACGCCGTCATGCTGACCAATTTCAAAAAGATCAGATACTCCTTTCGATGTGGCAGACAGTGAGTAAACGATTGCACTATTAGTCCCTTTATCTGCGTCAGATGCGCTAACTGTAGTCAAAATGGTTCCCCTTGGAGCGTTCTCTTctaaattggttttatatactGCTTGACCACAAACAGGAGCATTATCATTTGCGTCTAGGACGTTAATAAGAATTTGCATTGTGCCAGATAACCGTGGCTCGCCCCCGTCAAATGCTGTTAACAGCAAAGTAATGTGTTCTTGCTTCTCTCGGTCAAGCGGCTTTTCTAAAATCAGTTCCACGCTCTTAGTGCCATCTGGTAAACTATGTATTTTTAATCCGAAATTATCAGTCGGTTTCAACGTGTAGCTTTGAAGACCATTTTCTTTAACATCATTATCTACAGCAGCCTCCACAGCGAATTTTGCACCAGAAAATGTCGACTCGCTTATTTCAAATTtcatctcattttctgcaaaagcAGGAGCATTGTCATTTACATCGGTGATTTCTAATGTCACTCTGAAAAATTCCATGGGATTCTCTAAAATAACCTGAAAATGTAGAGCGCAAGGCGTTGTCTGTCCGCACAGAGCTTCTCGGTCTATTCTCTCTTTGATGAGGAGGACTCCCCTCTCTTTATTTAGCTCGATGTATTCAGTGCTGTCCCCTGTATAAATACGAGCTTTACCTGATTTTAGTCTCTTTAAATCTAATCCTAAATCCTGCGCTATGTTACCGACTAAAGATCCTTTGGGCATTTCCTCTGGAATGGAGAAACTGACCTGTCCGCGCACTGAACTGAGACAGACGAGATACACAAACAGCAGTACTTGCCGCGCCATTGTTCTCTCCGACATTTTCCACCAGCGATATTAAAACAGATCCTGTGACCTAGGCAGGCAGTCAAGAAAGAGCATGCTACTTTATATTTCGATAGAGGAATATACACAAAAAGGTGTAAAagtgaaattatatatatatacttaaaacaaATACTCCAAAAATCAATGGCTATACGATTCGTTGCGTGTTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97683 True 2600 lncRNA 0.43 2 9116960 9126594

Neighbor

gene id symbol gene type direction distance location
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 358832 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 942066 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 1348599 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 1397904 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 1420052 7690185 ~ 7696908 (-)
mfsd7 mfsd7 coding upstream 126272 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 418344 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 831926 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 946635 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 1039733 10166327 ~ 10184846 (-)
G72404 NA non-coding downstream 80931 9009427 ~ 9036029 (-)
G72370 NA non-coding downstream 259444 8853896 ~ 8857516 (-)
G72338 etf1,LOC108430956,LOC108275025,LOC107742375,LOC105893093 non-coding downstream 334800 8664755 ~ 8782160 (-)
G72357 NA non-coding downstream 389207 8726340 ~ 8727753 (-)
G72345 fbxw11a non-coding downstream 414645 8701883 ~ 8702315 (-)
G72443 LOC108438833,LOC108438834,LOC108438829,LOC107596372 non-coding upstream 15876 9142470 ~ 9158122 (-)
G72446 pcdh2g20,LOC108192077,LOC107655635,LOC107588304,LOC108438834,LOC100536800 non-coding upstream 22532 9149126 ~ 9158914 (-)
G72447 pcdh2g20,LOC100536800,LOC108192077,LOC107588304,LOC107747110,LOC107655636,LOC107655635 non-coding upstream 31874 9158468 ~ 9165286 (-)
LOC111193091 NA non-coding upstream 69395 9195989 ~ 9196455 (-)
G72482 NA non-coding upstream 456755 9583349 ~ 9583897 (-)
G72336 NA other downstream 471359 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1274680 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 1526406 7551185 ~ 7590554 (-)
G71862 NA other downstream 1804034 7309775 ~ 7312926 (-)
G71826 NA other downstream 2059317 7057110 ~ 7057643 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 39284 9165878 ~ 9174309 (-)
G72453 NA other upstream 61805 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 674461 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 729805 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 925358 10051952 ~ 10054034 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000221_00689257_00695241 NA coding CI01000221 null 689257 ~ 695241 (+)
rainbow trout (Oncorhynchus mykiss) LOC110533704 cep162 misc NC_048566.1 CM023220.2 25417440 ~ 25427699 (-)
mexican tetra (Astyanax mexicanus) G107463 NA non-coding NC_035908.1 CM008311.1 31201997 ~ 31202224 (+)