G72437 (LOC107655635,LOC108438829,LOC107754498,LOC108438834,LOC107747110,LOC107754548,LOC108438831,LOC108274935,LOC107655634)


Basic Information

Item Value
gene id G72437
gene name LOC107655635,LOC108438829,LOC107754498,LOC108438834,LOC107747110,LOC107754548,LOC108438831,LOC108274935,LOC107655634
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9122644 ~ 9143407 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97684
CTGTGTGTCGGGATAACCGTGGACCATTTTTTCCCTCTGCACATGCGTGAGAGTGTGAGTTCCACTGGTGTCCAAACTAATGATGCTGTCACTGGAAGATCTGGCATGTTTCATATCACTATTTCTTGAGTCAGTCGTCCTGCAGACCTCATAATTATACACGTGCTGTAAAGTTCCTGTACCCCCTACGTCTGCGTAAAAGGGTGGATAATATGGAATAACTGGCAGATTGGCACCGGATTTGTGAAACATCCTCTCACGTCTCCATCTGTAGCATTTGACTGACAGTATGGCTATGATGGACACGATGAAGAGAAAGGAAACTACAGCCAAGGCCAAGACTAGATAAAAAGTCAGATTGTCGTTGTAATCCTTGTCGTGCGTAAAGTCAGTAAACTCCGAGAGCACTTCAGGGAAACTGTCCGCCACCGCCACGTTAATATTGACTGTAGCTGAACGAGAGGGCTGTCCGTTGTCCTCCACTACAACAGTGAGCTTCTGCTTCACAGCATCTTTATCGGTCACCTGGCGCACAGTTCTTATTTCTCCATTCTGTAAGCCCACTTCAAACAGCGCCCTgtctgtggatttctgcagtttATATGAAAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTGGTCACGAGATAGCCCACCTCTGCTGAACGAGGCACCATTTCAGCCACCA
>TU97685
TACACATGCTGTAAAGTTCCTGTTCCCCCTACGTCTGCGTAAAGTGGTGGATAATATGGAATAACTGGCAGATTGGCACCGGATTTGTAAAACATCCTCTCACGTCTCCATCTGTAGCATTTGACTGACAGTATGGCTATGATGGACACGATGAAGAGAAAGGAAACTACAGCCAAGGCCAAGACTAGATAAAAAGTCAGATTGTCGTTGTAATCCTTGTCGTGCGTAAAGTCAGTAAACTCCGAGAGCACTTCAGGGAAACTGTCCGCCACCGCCACGTTAATATTGACTGTAGCTGAACGAGAGGGCTGTCCGTTGTCCTCCACTACAACAGTGAGCTTCTGCTTCACAGCATCTTTATCGGTCACCTGGCGCACAGTTCTTATTTCTCCATTCTGTAAGCCCACTTCAAACAGCGCCCTgtctgtggatttctgcagtttATATGAAAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTGGTCACGAGATAGCCCACCTCTGCTGAACGAGGCACCATTTCAGCCACCA

Function

NR:

description
PREDICTED: protocadherin beta-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97684 True 701 lncRNA 0.48 2 9122644 9130292
TU97685 False 544 lncRNA 0.48 2 9122644 9143407

Neighbor

gene id symbol gene type direction distance location
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 364516 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 947750 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 1354283 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 1403588 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 1425736 7690185 ~ 7696908 (-)
mfsd7 mfsd7 coding upstream 109459 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 401531 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 815113 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 929822 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 1022920 10166327 ~ 10184846 (-)
G72404 NA non-coding downstream 86615 9009427 ~ 9036029 (-)
G72370 NA non-coding downstream 265128 8853896 ~ 8857516 (-)
G72338 etf1,LOC108430956,LOC108275025,LOC107742375,LOC105893093 non-coding downstream 340484 8664755 ~ 8782160 (-)
G72446 pcdh2g20,LOC108192077,LOC107655635,LOC107588304,LOC108438834,LOC100536800 non-coding upstream 5719 9149126 ~ 9158914 (-)
G72447 pcdh2g20,LOC100536800,LOC108192077,LOC107588304,LOC107747110,LOC107655636,LOC107655635 non-coding upstream 15061 9158468 ~ 9165286 (-)
LOC111193091 NA non-coding upstream 52582 9195989 ~ 9196455 (-)
G72482 NA non-coding upstream 439942 9583349 ~ 9583897 (-)
G72483 NA non-coding upstream 459868 9603275 ~ 9605540 (-)
G72336 NA other downstream 477043 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1280364 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 1532090 7551185 ~ 7590554 (-)
G71862 NA other downstream 1809718 7309775 ~ 7312926 (-)
G71826 NA other downstream 2065001 7057110 ~ 7057643 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 22471 9165878 ~ 9174309 (-)
G72453 NA other upstream 44992 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 657648 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 712992 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 908545 10051952 ~ 10054034 (-)

Expression


Co-expression Network