G72446 (pcdh2g20,LOC108192077,LOC107655635,LOC107588304,LOC108438834,LOC100536800)


Basic Information

Item Value
gene id G72446
gene name pcdh2g20,LOC108192077,LOC107655635,LOC107588304,LOC108438834,LOC100536800
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9149126 ~ 9158914 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97695
CTTCACTTATGAGTTTCTCCCTCTGAGCACGTGTGAGAGTTTGTGTTTCATTTGTATCAAGACTAATGATGCTCTGAGTTGGTTTCATGTGTTTCAGATCACTTTTTCTGGAGTCAGTCGTCCTGCAGACTTCATAATTATAGACATGTTGTAAAGTTCCTGTACCCCCTACGTCTGCATAAAGAGGTGGATAATATGGAATAACTGGCAGATTGGAACCTGATTTGTAAAACATCCTCTCACGTCTCCATCTGTAGCATTTGACTGATAGTATAGATATGATGGACACGATGAACAGAAAGGAAACTACAGCCAAGGCCAAGACTAGATAAAAAGTCAGGTTGTCGTTGTAATCCTTGTCGTGCGTAAAGTCAGTGAATTCCGAGAGCACTTCAGGGAAACTGTCCGCCACCGCCACGTTAATATTGACTGTAGCTGAACGAGAGGGCTGTCCGTTGTCCTCCACTACAACAGTGAGCTTCTGCTTCACAGCATCTTTATCGGTCACCTGGCGCACAGTTCTTA

Function

symbol description
pcdh2g20 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
protocadherin beta-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97695 True 525 lncRNA 0.44 2 9149126 9158914

Neighbor

gene id symbol gene type direction distance location
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 390998 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 974232 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 1380765 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 1430070 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 1452218 7690185 ~ 7696908 (-)
mfsd7 mfsd7 coding upstream 93952 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 386024 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 799606 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 914315 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 1007413 10166327 ~ 10184846 (-)
G72437 LOC107655635,LOC108438829,LOC107754498,LOC108438834,LOC107747110,LOC107754548,LOC108438831,LOC108274935,LOC107655634 non-coding downstream 5719 9122644 ~ 9143407 (-)
G72436 NA non-coding downstream 22532 9116960 ~ 9126594 (-)
G72404 NA non-coding downstream 113097 9009427 ~ 9036029 (-)
G72370 NA non-coding downstream 291610 8853896 ~ 8857516 (-)
G72357 NA non-coding downstream 421373 8726340 ~ 8727753 (-)
LOC111193091 NA non-coding upstream 37075 9195989 ~ 9196455 (-)
G72482 NA non-coding upstream 424435 9583349 ~ 9583897 (-)
G72483 NA non-coding upstream 444361 9603275 ~ 9605540 (-)
G72497 NA non-coding upstream 548468 9707382 ~ 9709185 (-)
G72508 NA non-coding upstream 591536 9750450 ~ 9750692 (-)
G72336 NA other downstream 503525 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1306846 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 1558572 7551185 ~ 7590554 (-)
G71862 NA other downstream 1836200 7309775 ~ 7312926 (-)
G71826 NA other downstream 2091483 7057110 ~ 7057643 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other upstream 6964 9165878 ~ 9174309 (-)
G72453 NA other upstream 29485 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 642141 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 697485 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 893038 10051952 ~ 10054034 (-)

Expression


Co-expression Network