G72449 (pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833)


Basic Information

Item Value
gene id G72449
gene name pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9165878 ~ 9174309 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97699
GATCTTCACAGTCATTTATCAGATTGTCTCTTTGCGCatgcctgagtgtgtgtgttccgCTGGTATCCAAACTCATTATGCTCTCACTGGAAGGTCTTACATATTTCAGATCACTCTTTCTGGAGTCAGTCGTCCTGCATACCTCATAATTATACACATGCTGTAATGTTCCTGTACTCCCTACGTCTGCATAAAGAGGTGGATAATATGGAATAACTGGCAGATTGGCACCGGATTTGTAAAACATCCTCTCGCGCCTCCATCTGTAGCATTTAACTAAAAGTATGGCTATGATGGACACGATGAACAGAAAGGAAACAACAGCCAAGGCCAAGACTAGATAAAAAGTCATGTTGTCGTTGTAATCCTTGTCATGCGTAAAGTCAGTGAACTCCGAGAGCACTTCAGGGAAACTGTCCGCCACCGCCACGTTAATATTGACTGTAGCTGAACGAGAGGGCTGTCCGTTGTCCTCCACTACAACAGTGAGCTTCTGCTTCACAGCATCTTTATCGGTCACCTGGCGCACAGTTCTTATTTCTCCATTCTGTAAGCCCACTTCAAACAGCGCCCTGTCTGTAGCTTTCTGCAGTTTATATGAGAGCCAGGCATTCTGTCCAGAGTCCACATCAACAGCCACCACTTTGGTCACGAGATATCCCACCTCTGCTGAACGAGGCACAATTTCAGCCACCACAGAGCCACCAGTCTGCACTGGATACAGAACCTGAGGCGCGTTGTCGTTCTGGTCCTGAATCACTATTTTCACACTCACATTGCTGCTGAGAGGAGGATTTCCTCCGTCTTGCGCTTTTACACGAATATGAAACTCTTTGGTTTGCTCGTAATCAAAAGAGCGAACAGCAAGAATTTCTCCGCTCTCCGCATTCACTGAAATATGAGTCGAGGCTGAAACTCCATTCAGGAGAACATCCTCAAGAAAATAGGAAATACGCGCGTTGTTACCAGAGTCTTTATCAGCTGCTGTCACTGCGAATATAGACACTCCAGGTGTGTTATTTTCCAGCACATAAGCGGTATATGACTGATGCTGAAACAGAGGGGCGTTGTCATTTACATCAGATATTTTCAGATTGAGAGTTTTATTGGTAGAGAATGAAGGAAAACCCTCATCAGTAgctgttattgttatattatattcagaACATTTCTCTCGGTCTAAAAACTGATTAGTGATTAAACTGTAGAAATTAGAGGAAGAGGATTTGATGCGAAATGGTAAATCTGAATCCACTAAACATCTAATCTGACCGTTTTTACCGAAGTCGATGTCTTTAATATTGAGCATCGCTATAACAGTCTCCGGGGCGGAATCTTCTGGTATGGGATTGGAAAATGAGATAACACTGATAACAGGTGCATTATCATTAACATCAGTGATTTCAACTAGCACTTTACTGGTGTCAGTTAATCCACCATTGTCCATTGCTTTTACATTAAGTTCGTActgtttagatttttcaaaatcTAAGATTCCATTAACTCGAATGTCTCCCGTATCTGAATTAACGGTGAAAAAATCCATAGCTTTTCCAGTGCTCTGTGAAAATGAATATGAAACCTCACCATAGGAGCCTTTGTCCTTGTCGGTAGCGCGTACAGTCACTACTGAACTGCCCTTTTGAGCATTTTCTGGTAAAGACACTCGGTAAACAGGCTGACTGAACACGGGAGGATTGTCGTTTGCATCAATAACAACGACGGTTATTTTAACTGTTCCAGATTTTTGAGGATTTCCTCCATCATACGCTGTCAGAATTAATTTATGCTCTTCTTGTTGCTCTCTGTCTAAAGGTGTTTGTAAAACCATTTCAACATACTTAGTCCCATCACTACGTGAAAATTCTTTTAGTGAGAAAATATCGGCTGGTTTCAGAGTATAGCTCTGCAATGTGTTTAATCCAACGTCAGGATCGTGCGCATTTTCTAATGAAAATAACGACCCCCTGACGACAGATTCCATTATttcaatattgatttcttttttttcaaaaaccGGAGCATGATCATTAACATCTAATATTTCTACATCGATTCTATGCAGCTCCATCGGGCTTTCTAGAATGATCTGAAAATGTAAAGAGCACGGAGTAACCTGGGCGCACAGCTCCTCTCTATCTATCCTGTCTCTCACTACCAGAGTCCCTTTATCTACATTTAGACCGATGTACTCACGACTGTCCTCCGTAAAGATCCGCGCTCGACCGGATTTCAGTCTTTTTACATCCAAACCGAGATCCTGCACGATGTTTCCCACAACAGAGCCCTTACTCATCTCCTCAGGAATAGAGTAACGGACCTGCCCATGCGCTAGGGTCAGAACAAagcaaagaagaaaaataagctTCATCTGC

Function

symbol description
pcdh2g29 Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in brain.

NR:

description
PREDICTED: protocadherin gamma-A11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97699 True 2375 TUCP 0.42 3 9165878 9174309

Neighbor

gene id symbol gene type direction distance location
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 407750 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 990984 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 1397517 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 1446822 7699890 ~ 7719056 (-)
LOC103026262 gnpi1,gnpda1,LOC103026262,LOC108430975,LOC107741117,LOC107664733,LOC107554697,LOC104938351 coding downstream 1468970 7690185 ~ 7696908 (-)
mfsd7 mfsd7 coding upstream 78557 9252866 ~ 9276501 (-)
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding upstream 370629 9544938 ~ 9625510 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 784211 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 898920 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 992018 10166327 ~ 10184846 (-)
G72447 pcdh2g20,LOC100536800,LOC108192077,LOC107588304,LOC107747110,LOC107655636,LOC107655635 non-coding downstream 592 9158468 ~ 9165286 (-)
G72446 pcdh2g20,LOC108192077,LOC107655635,LOC107588304,LOC108438834,LOC100536800 non-coding downstream 6964 9149126 ~ 9158914 (-)
G72443 LOC108438833,LOC108438834,LOC108438829,LOC107596372 non-coding downstream 7756 9142470 ~ 9158122 (-)
G72437 LOC107655635,LOC108438829,LOC107754498,LOC108438834,LOC107747110,LOC107754548,LOC108438831,LOC108274935,LOC107655634 non-coding downstream 22471 9122644 ~ 9143407 (-)
G72436 NA non-coding downstream 39284 9116960 ~ 9126594 (-)
LOC111193091 NA non-coding upstream 21680 9195989 ~ 9196455 (-)
G72482 NA non-coding upstream 409040 9583349 ~ 9583897 (-)
G72483 NA non-coding upstream 428966 9603275 ~ 9605540 (-)
G72497 NA non-coding upstream 533073 9707382 ~ 9709185 (-)
G72508 NA non-coding upstream 576141 9750450 ~ 9750692 (-)
G72336 NA other downstream 520277 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1323598 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 1575324 7551185 ~ 7590554 (-)
G71862 NA other downstream 1852952 7309775 ~ 7312926 (-)
G71826 NA other downstream 2108235 7057110 ~ 7057643 (-)
G72453 NA other upstream 14090 9188399 ~ 9225559 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 626746 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 682090 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 877643 10051952 ~ 10054034 (-)
LOC103046452 rassf7 other upstream 927464 10101773 ~ 10162484 (-)

Expression


Co-expression Network