G72483


Basic Information

Item Value
gene id G72483
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9603275 ~ 9605540 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97755
CTCTGGTTCGACCTGAAGATGTTAAACTGCTTGTTTGCTGAGTTGAGCTCCATCTTTTAGGCTGAATTGACGAATTGTTTCTTACAGCTGTGAAAATGAGCTGTGCTGTGTTTTACATCTCCAGCTGAGTCTCACTTCATTCTCTGTGACCTTCAacactgtactctctctctctctctatttatctttctttatctctctctctctctctcaatggaACTGGGAGCTATGGTGATTAAGACGTGTTATGGTTGTAAAAACAGTGTGCTATTCCctgccctccctctctctgtgtaaTCATACACACTATCATTTACTGTATTCTCTgtacagagagaagagagagaataagagaggagaaaagaaagaaagagagacagagggaaaaagacagagagtgagagggaaatAGAAAGGGGTTAAAAcataaagaaagagacaaaataaaGACGAGAGCGATGtagaagaaaaagacagaactGAAAGGGCGAGACATGGAGAGATAAGATAAGAAAACAGCAAGAGACAAAATCAGAGATTgataaaaaggaaagaaagacgGAGGAAGAAGGAAAGGTTAAACCAGTAAAAGAGACATTAAAAGGACAGAGAtggggagacagagagagaaagttagaGAGAGTGATGAAGCATGGGAGGGAGATGGATAAATGGtaagagaaaattagaaaaacaaatacaagaggagagaaaaaaggaaaaagagaggaacagagagagagagagacaaagggaaaaacacagagagaggaaaATAGAGAGGGGTTAAAACATAAAGAAAGAGACAGGATAAAGGCGAGAGGgatgtagaataaaaaaacggATATGAAAGGGTGAGACATGGAGAGATAAGATAAGAACACAGCAAGAGACAAAATCAGAGATTgataaaaaggaaagaaagataaagatacAGTACATGTTGAAAAGGCAGGAGAAAAGGAAAGGTTAAACCAGTAAAAGAGACATTAAAAGGACAGGGATGGAGAACAGAAAGttagagagagtgatggagcaagggaggaagatgaagaaaaggatagaaaaaacaagtaaaacgtcgagaaagagagagaaaaggaaaagagaggaaCAGAAAGATAGACAAAAGCAGAAAGACAAAGAGcaagaatacagaataaaaacaagagagaggtagaagaaAAAGACATATTTGAAAGGGAGAGACATGAAGAGATAAGATAAGAACACAGCGAGGGACAAAATCAGAGtttgataaaaagaaaagaaagataaagagctCATGTTGAAAAGgcaggagatggagagagagatgttaaAACAGACAAAGAGACATTAAAAAAGGACAAAGATGGAGAAACAAAGACAGAAAGTTAAACAGAAGGAtggagcaagagagggagatgGATAAATGGAAACATGTTAAGCAATAACAAAGGGagagaatataaaaatgtaaagagatGTGTTGAAAAGGCAGAAAAGAGCAAaggaagagggagagatagagacaaaAAAGTGAGAGACATGTTAAAGGGCAGAAGAGAGGgcgatagaaagagagagagcgaaacaTGGCactgagaaagagacagagagatacaccAAAtgaccaaatgtttgtggacactaatgaatgcatttagctaaGTTGCACCCATTTTTCAATAGGACGTATTAGCACCCAAAGCTAATGCCAGGCATGAACTAGAGGTGTATAAAGCCCCCAggactgagctgtggagcagagaaatgataaaattatattttcaaaaataaggaaagagagagagagagagagaaatatagatatagatattcCGCTACAGCACTACAGAGACTTGAGTTATGACCTAAGTGATACATCATCATCGTTGTGAATATTTCTCCttgaaaaggaaaataaaatgttagaTATTTCAAAGGGTGTCTTCAAAAGAGACACAGTCAATACCTCTCCCGCTCTGTAGCTCCATAACTCTTTTTGATATGCGGCTGGAAGCATATTCATGAGGCgcagaattaaaaataaagtttcacTCCTACACCCTTCTGCTTCCCTGACCTTTGGAACTTTCTTTGAGGAGGAAAAGTAAAGCTTCCACCTCCCCCTGGCTGCTATAATAGCGGGGTTTTGTGAGCTGTGAAGGTCTTTGAGCTGCTGTTGTGTTGCCGGATGCTTTCAGCAGCGCTACCTGGGCGCAGGATGTGGGCGTTTAGAGAAACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97755 True 2230 lncRNA 0.39 2 9603275 9605540

Neighbor

gene id symbol gene type direction distance location
mfsd7 mfsd7 coding downstream 326774 9252866 ~ 9276501 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 845147 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 1428381 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 1834914 7726618 ~ 7768361 (-)
LOC103025952 hspa4,LOC108430974,LOC108274676,LOC100380717 coding downstream 1884219 7699890 ~ 7719056 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 352980 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 467689 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 560787 10166327 ~ 10184846 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding upstream 617578 10223118 ~ 10233197 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding upstream 1025306 10630846 ~ 10717984 (-)
G72482 NA non-coding downstream 19378 9583349 ~ 9583897 (-)
LOC111193091 NA non-coding downstream 406820 9195989 ~ 9196455 (-)
G72447 pcdh2g20,LOC100536800,LOC108192077,LOC107588304,LOC107747110,LOC107655636,LOC107655635 non-coding downstream 437989 9158468 ~ 9165286 (-)
G72446 pcdh2g20,LOC108192077,LOC107655635,LOC107588304,LOC108438834,LOC100536800 non-coding downstream 444361 9149126 ~ 9158914 (-)
G72443 LOC108438833,LOC108438834,LOC108438829,LOC107596372 non-coding downstream 445153 9142470 ~ 9158122 (-)
G72497 NA non-coding upstream 101842 9707382 ~ 9709185 (-)
G72508 NA non-coding upstream 144910 9750450 ~ 9750692 (-)
G72524 NA non-coding upstream 177780 9783320 ~ 9783821 (-)
G72526 smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958 non-coding upstream 182961 9788501 ~ 9799403 (-)
G72596 LOC107751334,LOC107746538,LOC107680923,LOC107551454 non-coding upstream 349541 9955081 ~ 9957526 (-)
G72453 NA other downstream 377716 9188399 ~ 9225559 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other downstream 428966 9165878 ~ 9174309 (-)
G72336 NA other downstream 957674 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1760995 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 2012721 7551185 ~ 7590554 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 195515 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 250859 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 446412 10051952 ~ 10054034 (-)
LOC103046452 rassf7 other upstream 496233 10101773 ~ 10162484 (-)
LOC111193093 NA other upstream 1619239 11224779 ~ 11225954 (-)

Expression


Co-expression Network