G72526 (smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958)


Basic Information

Item Value
gene id G72526
gene name smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9788501 ~ 9799403 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97805
GAAAATATTGACAATTACTTGCTGTTAAACAATCACAATGACAAGGGTACAGAACATTGGAGAGGAAAGGTCCACCTGTCccgatattttttttttgctttcaaactgaaaaaaagaaaactcaacctgtcactcaaataaaaaaatatctacaaaaaaaacttgcaaaGTTATCCTAGGAATATTCTGGTCATGGCTAATGTTTTAAGGTTTCCAAAGCTTGAGAAGACCATCTTCACTATATGTAGAGATCAAGTTCTGATGAGGGTGGTGGGCAATACCAATCACATCCTTCTCGTGTACTGTCAAGGTTCTCTCCAGTTTGCCAGTGACTGTGCTGAAGCAGTAGAGCACGAAGTCCTCTCCCACGCAGTAGATCCACTCTCCTCTGGGGGAAAGTGTGCAGCCCCTCTCGCTTACCAGAGCTGAAACTCCTCACAATCTGGCCCTGCATGTTCATAATGACCACAGTGTTGGAGCGGTTACAGACTACAAAATGCTCTGGGTTCTTGGGAAGGAGGATGACGTTGTTCACAGTAATGTCCGTGCCAGCTGAGGCGCCGAGAGATTTAAATGTGCTTGTGCACTCGGTGGTTTTCACGTTccaaatCTTCACCGTGCCATCAGAAGAAGCACTGATAATATGGTGGCCATCAGGAGTGAATGTGGCTTCATTAACGAATGAAGAGTGGCCTCGGAACTCCTTCAGAGACTTGCCTGATTTTAGCCCATGAACtCTGATTGTTTGGTCAAACGAGGCTGAAAGAAGTTGACTGCTGTCTTTGGAGAAGCTCACACAGGTCACACCTTTACTGTGAGCACGCTCAAACCGGCGCAGACACTGACCACTCTGGATCTTCCACACCTTTATTTTGCCATCCTGAGCTCCTGTAGCCAGCATCTCTGTATCTCTGCTAAAACACATGCACAGCACAGCGTCGTCCATCATCATAAAATTATCCTGCGCCTGGTACTTCAGATCctttCTGATCTTGCCTGTGGTGAAGTTCCACACCTCAATGAAGCCATCAACAGAGCCAGTGACCAAATACTGACCATCCGGAGAGAAGCGGGAGCACTCCACGTGAGACTTCTGAccaaaCTTGATGTGTCTGCTCAGCTGGGTGGGGAATCGCTCTTCCTCTACATCCTTCACTGCAGCTTTGCCTCTGAACAAGTCGATAGTCATACCAGGAGGCAGAAGACCCTGGTGCTGCTGCCACTTCAGAGaCTGTCCAAGCAGAGCCATGAGACGTGAAGGAGGCACCACACTGACCTCGCCAGCCAACGCCTGGGCAATGGCTGCTCGGCGCTTTTCCTTACTGCTGCCATCAGGGTAAGCCTCTCTGGGGTCGAAGTAGGAGCGGGCCAGCAGGTTCTCCAGGTGAATGTACCTCTCAGGCTGAGTCTGTTTCAGCATAATCATGGGGTCAGTTTGTCTCAGCAAAGACCTGGCAGCTCCCAATTCTCTCAGCTCAATCAGGGTCTTGTCTGGCAGCTTGAGGGACTGGATAGCCTGTAGTACAGTGTCCCAGTGACCGCTGTTAATGTCAGCCACAAAACTTTCAATACTGTCCACTGTGTTGAGGGATACGGTGGTCTCCTCCTGCAGTGTTGCCAGTGTGCGATGCAGGTTATTTTCCTTTAAGTACTGCATGATCAGACGGATTAcgTCTGCTGACTCGATCTCCAAAGACATGGTGTAGATTTAGTATCAGTGGCAGACACGACACGCACTCAAACAAACAGCACGGGCTGTAGAAACGTCCGGACTCCTGCTCTGCGCTCCTGCTGAACACCGCCGACACTCAGCGCCACCCTGCGACCACTGCCAGCTACTCCCACCTACCCCCATACACTACATATACTAATCCCATACACTGTTTGTATACGAGGAATCTGTCTAGTATGAGAAACACAAaccacataataaaaaaaaatacaatataccaTATTGACAcaatatgttacagtatgttacatacagg
>TU97809
GAAAATATTGACAATTACTTGCTGTTAAACAATCACAATGACAAGGGTACAGAACATTGGAGAGGAAAGGTCCACCTGTCccgatattttttttttgctttcaaactgaaaaaaagaaaactcaacctgtcactcaaataaaaaaatatctacaaaaaaaacttgcaaaGTTATCCTAGGAATATTCTGGTCATGGCTAATGTTTTAAGGTTTCCAAAGCTTGAGAAGACCATCTTCACTATATGTAGAGATCAAGTTCTGATGAGGGTGGTGGGCAATACCAATCACATCCTTCTCGTGTACTGTCAAGGTTCTCTCCAGTTTGCCAGTGACTGTGCTGAAGCAGTAGAGCACGAAGTCCTCTCCCACGCAGTAGATCCACTCTCCTCTGGGGGAAAGTGTGCAGCCCCTCTCGCTTACCAGAGCTGAAACTCCTCACAATCTGCATTATCAAGACATTTACACAACATACTTCAACAATGGGTtgcaaatatttatattaaaa

Function

symbol description
smu1 Involved in mRNA splicing, via spliceosome. Located in nucleus. Part of U2-type precatalytic spliceosome.

NR:

description
PREDICTED: WD40 repeat-containing protein SMU1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97805 True 1988 lncRNA 0.48 13 9788501 9799403
TU97809 False 505 lncRNA 0.40 2 9798072 9799403

Neighbor

gene id symbol gene type direction distance location
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding downstream 162991 9544938 ~ 9625510 (-)
mfsd7 mfsd7 coding downstream 512000 9252866 ~ 9276501 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 1030373 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 1613607 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 2020140 7726618 ~ 7768361 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 159117 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 273826 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 366924 10166327 ~ 10184846 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding upstream 423715 10223118 ~ 10233197 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding upstream 831443 10630846 ~ 10717984 (-)
G72524 NA non-coding downstream 4680 9783320 ~ 9783821 (-)
G72508 NA non-coding downstream 37809 9750450 ~ 9750692 (-)
G72497 NA non-coding downstream 79316 9707382 ~ 9709185 (-)
G72483 NA non-coding downstream 182961 9603275 ~ 9605540 (-)
G72482 NA non-coding downstream 204604 9583349 ~ 9583897 (-)
G72596 LOC107751334,LOC107746538,LOC107680923,LOC107551454 non-coding upstream 155678 9955081 ~ 9957526 (-)
G72633 NA non-coding upstream 190793 9990196 ~ 9990507 (-)
G72689 tsg101,tsg101a non-coding upstream 413177 10212580 ~ 10221634 (-)
G72802 NA non-coding upstream 768501 10567904 ~ 10625271 (-)
G72803 NA non-coding upstream 771761 10571164 ~ 10627025 (-)
G72453 NA other downstream 562942 9188399 ~ 9225559 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other downstream 614192 9165878 ~ 9174309 (-)
G72336 NA other downstream 1142900 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1946221 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 2197947 7551185 ~ 7590554 (-)
elp1 ikbkap,LOC107751344,LOC106611638,LOC105419749 other upstream 1652 9801055 ~ 9824519 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 56996 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 252549 10051952 ~ 10054034 (-)
LOC103046452 rassf7 other upstream 302370 10101773 ~ 10162484 (-)
LOC111193093 NA other upstream 1425376 11224779 ~ 11225954 (-)

Expression


Co-expression Network