elp1 (ikbkap,LOC107751344,LOC106611638,LOC105419749)


Basic Information

Item Value
gene id elp1
gene name ikbkap,LOC107751344,LOC106611638,LOC105419749
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9801055 ~ 9824519 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97813
CAGCACGTTTCTTTAGTAATCAGGCTATGATGTAAAAAAGTTTTACCTACCTATTAAGATAAATTTAATATTCCCTACATCTGTCTCACTTTATTTCAGATCACAGGCCCTAACTCTACCGCCAACAGTATCATGGCTTCTTTCCAGCAACCCAGGCCGTCTGCAGTGCCTCAGCAAGatgcTGAAATCCTCATACGACCCAAAATGCGACAGTCTGTCAAATGGAAACTCTGCATGTTAAAGTAAATTGTGTTtaggttaaaatatattttacattgtatcatTAAAGAATATTCTGGAATTCGCAGTTCAGCAGTGTATTcactttaacaaaataaaatt
>XM_022672095.1
ctctGTAGATACTCTGTGGTAGTGAGGATATCTATGGTGTGTTTGAGAGCTGACAGCGTGCTTCTGTTTTCGTGCTTCTAATGGTTATATTTATCAGAAGTGAACGGTGATCATCATGAGGaacctgaagctgctgaagtGTCTGAGCTCTGTGGAGCTGCAGAGTCCAGGTTctcctcagtgtttctctgtTAGGACAGATACTGGCTCTCTGCTGATCTCCTCTCAGTTCTCCATCACTGAATATGATCCCCCCTACAGGACAGGTGAGCTCACACTGTGGCCAGGTGTGTTGAACGAGGTCTCTCTGACATCTGAAGACTATCTGCCAGAAGATGGTCAGGGTGTTGTAGTCGGTATTCAGGACCTGCCAGATCAGGAATCCGTCTGTGTGGCCACTTCACGTGGTGATGTTGTTTTGTACAACCTGAGCACTAATCAGTTGGAGTGTGTTGGTACAGTGGACAGTGGTCTGACTGCTATGAGCTGGAGTCCAGACCAAGAGGTGGTGGTGTTTTGCACAGgccaggAGACAATTATCCTGATGACCAAAGACTTTGAGCCTATAACCGAGGTGGACATTCACCAGAATGAGTTTGGAGAAGGTAAATTCATCACAGTTGGATGGGGGAAGAAGGAGACTCAGTTCCATGGCTCGGAAGGAAAGCAGGCTGCTCAGAAGAAGGCTGCAGAAGTGCAGCCCGCTGTGCCATGGGATGATCGCAGGCCAAGGATTACATGGCGAGGTGATGGACAGCTGTTTGCTGTCAGTGCCATCTGCCCTCAGACTGggGCCAGAAAAGTCAGAGTGTGGAACCGAGAATGCGTTCTGCAGGCTACCAGTGAGGCTGTCAATGGCCTTGAACAGCCTCTTTGCTGGAAACCCTCAGGAAGCCTAATAGCCTCTAGTCAACGGCACCCTAACAAACACAGTGTTGTGTTTATGGAGAAGAATGGATTGCTTCATGGAGATTTCACTCTGCCCTTTGCAAAGGAGAAGGCCAGGGTGAAGGAGTTGCTTTGGAACAGTGACTCCTCAGTGCTGGCTGTCTGGCTTGAAGACATGAACCCAGGAGAGGATGGGAAACGCAACACGTACATTCAGCTGTGGACAGTTGGGAATTACCACTGGTACCTAAAGCAGAGCCTACATTTTGGAAATGATCCCTTGAAGGCCCCAGCTTGTTTGTGTTGGGACCCAGAAAAGCCCTTACGCCTGCACCTGCTGACTCGAGCCTGGGCCAGCTACACTTATGACTGGGGCTGGTGCACAGACCGCAGCCCTGGAGATGATTCTCAGGACAATGCCAATGTGGCAGTGATTGATGGAGATAAAGTTTTAGTGACTACGTTTCGTCAGTGTGTCGTTCCTCCGCCCATGTGTTCCTATGAGCTGCAGCTTCCTGCTGCTGTCAACATGGTCACCTTCCACTCTCAGCCTCAGAGGACCAATGAGCTTGCTGCATTAACAGCTGATAGTCGTCTACATATCTACGGCCGAGGCACTGAAGATGCAGCTGGAAATGGTAAAGGAGCACCTGGATTTCGAGTTGTCTCCAAGCCATCTGTCTTACAAAAGACATACAGTGTTGCAGTAGACCAGGAGGGGGTGCTGGCCATGCGTTTGTTGCTGTGGCTGAAGGAGGACGTGTTTGTGGCGGTGGCAGGTGGAGATGGACTAAACCAGTCAAGCCTGCTCTTCCTTAAACCAGCTGAGACTGAGGGCTCAGATAACAGACTGGAGATCAGGTCAAAAGTCGAGGTGGAAGGCCATGTGATCAGTCTGTGCCACAGTCCTAAAAGTGACACGCTGGCTCTGCAGCTGGAGGATGGTCAGATTAGGAGAGTGCACTGTGACTCCACAGAGGTGACTGTATCAGAGTGGAAGGATTCTACTGGGTACACTGTAAACTTTCCCCTACCTTGTGTACATACTGCACTGTGCACCATCAATGGACAGGAGCATGTAGTAGGTCTTACTGAACGTTATCACCTCTATATTGGTGACTCTGAGGTGGCCTCAAACGTTTCCTCGTTTGTGGTCTATGATGAGTTCCTACTGCTCACCACACATGCTCACACCTGCCGCTGTCTCCACCTGGCCACAATGTCCCTCAAAGATCTAAAAGCTGCTCTGAGTTCAGAAGCTACTCAGAATGATGAGAGCACACGCCGGGTAGAGAGAGGCTCTCGCATCGTTACCGTGGTTCCACAGGACACCAGGCTCATCCTGCAGATGCCCCGAGGGAACCTAGAGACCATCCATCATCGAGCACTTGTGCTGGCTCAACTCAGGAAGTGGCTTGATGATCTGAAATTTAGAGATGCCTTTGAGTGCATGAGGAAGCTGCGCATCAACCTCAACCTCATCTACGACCACAATCCCAAAGTGTTCTTGGAAAATGTAGAGACGTTTCTGAACCAGATTGATTCCATCAACAACGTCAACCTTTTCCTTACAGAGCTCAAAGAGGATGATACCACCAAGACAATGTACCCAAATCCAGCAAGTGCTGCATGCCAGTCAGCTTCAGCAAGTGGAGCAGATGGGAAGAAGAAAGTGGACACTATCTGTGATGCTCTGCGGTCAGCTATGGAAACCCTTGATCCActgaaattttgtttgtgtattttaacaTCACATGTGAGGAAGACCACACCAGAACTGGAAATAGCTCTACAGAAAGTCCATGAATTACGTGtGAATCCACCGAGTGAGAAGAATGCTGTGAGTGCTGAAGAGGCCCTGAAGTATCTCTTGTTCTTGGTCAATGTGAATGAGTTGTATGAACACTCTCTGGGAACTTACGATTTTGATTTGGTGCTTATGGTAGCAGAGAAGTCACAGAAGGACCCCAAAGAGTACCTTCCCTTTCTGAATATGCTAAAAACCCTGGAGCCTAATTACCAGCGCTACACCATCGACAAACACCTGAAGAGATACAAGAAAGCCTTGCATCACCTCAGCAAGTGTGGTGAGGAACACTTCACTGAGGTATTAAACCTGGTGAAGGATCAAAGGCTGTACACTGAAGCTCTGCAGCTCTACCCTGCAGAAAGCCAGCAATACAAGATGCTGAGTGTGGCCTATGCAGAGCACCTTGTAGAGCAGCAGCAGGCTGAGCAGGCGGGGCTGTTGCTGTGGCGCTGTGGAGAGATGCCCCGGGCCCTGCAGGCTTTCGTCAGCTGCATAAGCTGGAGACATGCCCTCGCTGTGGCAGTACACATCCCTCTGCCACCTGAACAGCTGGCACAGCTTGCCAGAGACCTGGCAGAGAAGCTTATTGAAGTGAGGCGACATGCGGAGGCTGCTGTGCTGTTGGAACAGTATGCTAAGGACTGTGAGGAGGCGATCTCTGCTCTGATAGAAGGAGCTGCATGGGAGGAAGCCCTCAGGCTAATTTACCTTTACAGCAGACAGGACATAGCTGAAACTCATCTGAAGCCTGCCCTTTTAGAAGCTCACAGTAATCAGTTGACCTTTCTGGAGTCTCAGAAGACACTTTTCACACGTCACAAGAACCGCCTGGTCGTGGTGCGAGAGCAGAAGGAGAAGGCTAGATTGGAGCTCCTTGATGAGGATGGGCCTGACTGTGCAGATGCTGAGCTTTATTCTGAGGCCAGCAGTGTTCTCACCGGCAGCCGCATTGGATCAAAATACTCAAAAAGCAACTCCCGCATCTCTGCgAGATCTTCTAAGAACCGCAGGAAAGCAGAAGGAAAGAAGCACAGCTTGAAGGAGGGAAGTCCCTTCGAGGATATCGCTCTTCTCCATGCCCTCGTTCAGATCATCCATGTGGTTGACAAGATGAGGGAGGAAATCCACAGTCTTCTGAAAGCTCTGGTGCTGTTTCAGTTTGACACACTGGCCAGCAGTCTACAGACAAACTACAGTGAGCTGCTCCAGCTTATAGAAAAGGGCATCCCAGAAATCTGGCAGGAGGGTCTTCAACAGGGccagatTTTATTTCAGATCACAGGCCCTAACTCTACCGCCAACAGTATCATGGCTTCTTTCCAGCAACCCAGGCCGTCTGCAGTGCCTCAGCAAGatgcTGAAATCCTCATACGACCCAAAATGCGACAGTCTGTCAAATGGAAACTCTGCATGTTAAAGTAAATTGTGTTtaggttaaaatatattttacattgtatcatTAAAGAATATTCTGGAATTCGCAGTTCAGCAGTGTATTcactttaacaaaataaaattatgctCCTTGCTTTATAAAA

Function

symbol description
ikbkap elongator complex protein 1

NR:

description
elongator complex protein 1-like

GO: NA

KEGG:

id description
K11373 ELP1, IKI3, IKBKAP; elongator complex protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU97813 False 342 lncRNA 0.36 2 9801075 9801510
XM_022672095.1 True 4236 mRNA 0.49 37 9801055 9824519

Neighbor

gene id symbol gene type direction distance location
cplx1 cplx1,LOC107751330,LOC107697630,LOC107660193,LOC107587069 coding downstream 175545 9544938 ~ 9625510 (-)
mfsd7 mfsd7 coding downstream 524554 9252866 ~ 9276501 (-)
LOC103029481 fgf18a,LOC103029481,LOC108430953,LOC108274431,LOC107747128,LOC107660900,LOC107754488,LOC105893086 coding downstream 1042927 8735077 ~ 8758128 (-)
enox2 enox2 coding downstream 1626161 7867201 ~ 8174894 (-)
med12 med12,LOC106604460 coding downstream 2032694 7726618 ~ 7768361 (-)
LOC103036760 LOC108442475,LOC108275030 coding upstream 134001 9958520 ~ 9965719 (-)
phrf1 NA coding upstream 248710 10073229 ~ 10093613 (-)
lrrc56 NA coding upstream 341808 10166327 ~ 10184846 (-)
LOC103047177 ldha,LOC103047177,LOC108442466,LOC107558315,LOC107707550 coding upstream 398599 10223118 ~ 10233197 (-)
abtb2 abtb2,abtb2b,LOC107675288,LOC107688574 coding upstream 806327 10630846 ~ 10717984 (-)
G72526 smu1,LOC108442464,LOC107082371,LOC106604632,LOC102223743,LOC108275199,LOC108243958 non-coding downstream 1652 9788501 ~ 9799403 (-)
G72524 NA non-coding downstream 17234 9783320 ~ 9783821 (-)
G72508 NA non-coding downstream 50363 9750450 ~ 9750692 (-)
G72497 NA non-coding downstream 91870 9707382 ~ 9709185 (-)
G72483 NA non-coding downstream 195515 9603275 ~ 9605540 (-)
G72596 LOC107751334,LOC107746538,LOC107680923,LOC107551454 non-coding upstream 130562 9955081 ~ 9957526 (-)
G72633 NA non-coding upstream 165677 9990196 ~ 9990507 (-)
G72689 tsg101,tsg101a non-coding upstream 388061 10212580 ~ 10221634 (-)
G72802 NA non-coding upstream 743385 10567904 ~ 10625271 (-)
G72803 NA non-coding upstream 746645 10571164 ~ 10627025 (-)
G72453 NA other downstream 575496 9188399 ~ 9225559 (-)
G72449 pcdh2g29,LOC108438834,LOC108438829,LOC108274931,LOC108438833 other downstream 626746 9165878 ~ 9174309 (-)
G72336 NA other downstream 1155454 8639538 ~ 8645601 (-)
LOC103030515 wu:fb13g09,LOC108441781,LOC108274673,LOC107554714,LOC107716370,LOC107677527 other downstream 1958775 7773895 ~ 7842280 (-)
LOC103027657 LOC108430978 other downstream 2210501 7551185 ~ 7590554 (-)
LOC103042271 LOC108442478,LOC108275244 other upstream 31880 9856399 ~ 9902893 (-)
LOC103037069 LOC103037069,LOC108442462,LOC101069290,LOC107675263,LOC107562830,LOC107707530,LOC107085412,LOC101171241,LOC103151621 other upstream 227433 10051952 ~ 10054034 (-)
LOC103046452 rassf7 other upstream 277254 10101773 ~ 10162484 (-)
LOC111193093 NA other upstream 1400260 11224779 ~ 11225954 (-)
LOC111193052 NA other upstream 1696368 11520887 ~ 11545246 (-)

Expression


Co-expression Network