LOC103043718 (LOC103043718,LOC108442465)


Basic Information

Item Value
gene id LOC103043718
gene name LOC103043718,LOC108442465
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035904.1
NCBI id CM008307.1
chromosome length 27092187
location 9968506 ~ 9970042 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU97903
ACAACatcacactcttcacacacgGCCTCACTTTGGGTGGATATTACAAAAGAAACTCCAGAAAAAATACCAAGTGCTTCTTTTCAGACTTCAGCAGCGGAAGAAGGccaaatattcaaattctgcAGTTTTCAGATGTTTTACAACATGACCGGGACAGCTGTGATACTGATGTGCCTGCTGCTCACCTTTTCTGTGGACGCAGAAGACAAGTCAAGGCTGTACAGAAGGCCTGCATGTGGAGACATGTCAATGAATCATGCATGTCCCCTCAACTACTCTCCAGTCTGCGGAAACGATGGTGTGACTTATCCCAACGAATGTGCTCTGTGTGTGCACAGACTGCACACCAACTCTGATGTTCTGATCGTGAAAGAAGGGGGCTGCTGAGGAGTGCAGGTATCGCCTCCCTCACCTGATCTCCACTTCTGCGTTCGTTTTTTGTGCTTGTTATGGTGCACTTTTCTACTCCTATTTACTCTGCACCTAGAACACGTAATCGTTTTCCTACATATACTCATATAGATGTGAACATGCTGCTTATGTTTGAATTTTGCTATTAAATATTCATTCCATGTATTatcaaa
>XM_007228038.3
ATGAAATATCAGCACCTCTCTCACTTCACAAGCAATCAATCTGCTGCAGGTGGTCGACCCCACAACatcacactcttcacacacgGCCTCACTTTGGGTGGATATTACAAAAGAAACTCCAGAAAAAATACCAAGTGCTTCTTTTCAGACTTCAGCAGCGGAAGAAGGccaaatattcaaattctgcAGTTTTCAGATGTTTTACAACATGACCGGGACAGCTGTGATACTGATGTGCCTGCTGCTCACCTTTTCTGTGGACGCAGAAGACAAGTCAAGGCTGTACAGAAGGCCTGCATGTGGAGACATGTCAATGAATCATGCATGTCCCCTCAACTACTCTCCAGTCTGCGGAAACGATGGTGTGACTTATCCCAACGAATGTGCTCTGTGTGTGCACAGACTGCACACCAACTCTGATGTTCTGATCGTGAAAGAAGGGGGCTGCTGAGGAGTGCAGGTATCGCCTCCCTCACCTGATCTCCACTTCTGCGTTCGTTTTTTGTGCTTGTTATGGTGCACTTTTCTACTCCTATTTACTCTGCACCTAGAACACGTAATCGTTTTCCTACATATACTCATATAGATGTGAACATGCTGCTTATGTTTGAATTTTGCTATTAAATATTCATTCCATGTATTatcaaa

Function

NR:

description
probable pancreatic secretory proteinase inhibitor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU97903 False 587 lncRNA 0.44 4 9968567 9970042
XM_007228038.3 True 648 mRNA 0.44 4 9968506 9970042

Neighbor

gene id symbol gene type direction distance location
LOC103044029 LOC108442474,LOC108275029,LOC107680923,LOC107660187,LOC107587072 coding upstream 10978 9910406 ~ 9957528 (+)
tbc1d2 tbc1d2 coding upstream 115449 9827287 ~ 9853057 (+)
LOC103043406 smu1,LOC108442464,LOC106604632,LOC107082371,LOC108243958,LOC103353869,LOC102223743 coding upstream 169043 9791271 ~ 9799463 (+)
pcgf3 pcgf3,LOC107562381,LOC107697629,LOC107751329,LOC107587068 coding upstream 620079 9276546 ~ 9348427 (+)
LOC111188173 LOC108438827 coding upstream 742947 9196453 ~ 9225559 (+)
thg1l thg1l,LOC103154062,LOC106912903,LOC107751338 coding downstream 4182 9974224 ~ 9977824 (+)
irf7 NA coding downstream 95374 10065416 ~ 10073101 (+)
hras hras,rash,LOC107562835,LOC103357265 coding downstream 215695 10185737 ~ 10206122 (+)
LOC103047796 NA coding downstream 237667 10207709 ~ 10212496 (+)
tsg101 tsg101,tsg101a coding downstream 242521 10212563 ~ 10221827 (+)
G72514 NA non-coding upstream 194907 9773199 ~ 9773599 (+)
G72503 NA non-coding upstream 246624 9720971 ~ 9721882 (+)
G72500 NA non-coding upstream 250591 9717673 ~ 9717915 (+)
G72496 NA non-coding upstream 258292 9708437 ~ 9710214 (+)
G72488 NA non-coding upstream 269508 9692669 ~ 9698998 (+)
G72606 NA non-coding downstream 7933 9977975 ~ 9978422 (+)
G72612 NA non-coding downstream 58441 10028483 ~ 10028846 (+)
G72615 NA non-coding downstream 87441 10057483 ~ 10057818 (+)
G72617 NA non-coding downstream 88643 10058685 ~ 10058886 (+)
LOC111193092 NA non-coding downstream 127217 10097259 ~ 10099145 (+)
G72281 LOC107754548,LOC108274935,LOC107754545,LOC107754498 other upstream 819087 9142899 ~ 9149419 (+)
LOC103030246 pcdh2ab8,pcdh2ab10,pcdh2ab12,LOC108430950,LOC101884096,LOC108274577,LOC107588388,LOC108430926,LOC108430925,LOC108430922,LOC108275110,LOC108430948,LOC108275111,LOC107588302,LOC107660888,LOC107754492,LOC107655665 other upstream 932480 8869128 ~ 9036026 (+)
G71788 LOC105418110,LOC105418502,LOC106676625,LOC102305489,LOC102201812 other upstream 3082965 6881587 ~ 6885541 (+)
G71682 LOC108430946,LOC108416517 other upstream 3429712 6525641 ~ 6538794 (+)
LOC103043949 ppp3cb,LOC108274683,LOC107660165,LOC107758531,LOC107680292,LOC107589094 other upstream 4011487 5871090 ~ 5957019 (+)
G72621 NA other downstream 108537 10078579 ~ 10082140 (+)
LOC103022150 brsk2a,brsk2b,LOC107707552,LOC107675281,LOC107600443 other downstream 302877 10272919 ~ 10626964 (+)
LOC103043719 NA other downstream 2901442 12871484 ~ 12897931 (+)
G73533 NA other downstream 4678787 14648829 ~ 14649551 (+)
rpgrip1l rpgrip1l other downstream 4921492 14891534 ~ 14921003 (+)

Expression


Co-expression Network